Hb_019863_060

Information

Type -
Description -
Location Contig19863: 113112-118839
Sequence    

Annotation

kegg
ID rcu:RCOM_0665150
description protein transporter, putative
nr
ID XP_011019039.1
description PREDICTED: target of Myb protein 1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9T6F7
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0665150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19929: 117316-117524 , PASA_asmbl_19931: 117849-118740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019863_060 0.0 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
2 Hb_000473_150 0.0715325411 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
3 Hb_000059_130 0.1017179392 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
4 Hb_002154_020 0.1032447511 - - protein with unknown function [Ricinus communis]
5 Hb_002804_010 0.1084015908 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
6 Hb_002387_040 0.1093998974 - - protein transporter, putative [Ricinus communis]
7 Hb_002248_120 0.1113311369 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_172421_010 0.1137856864 - - cysteine protease [Hevea brasiliensis]
9 Hb_006794_020 0.1138684685 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
10 Hb_007850_010 0.1146601703 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
11 Hb_001951_240 0.1155806379 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
12 Hb_001951_100 0.1159651214 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
13 Hb_001561_010 0.1173662404 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
14 Hb_000413_250 0.1189177396 - - Cysteine-rich RLK 29 [Theobroma cacao]
15 Hb_000175_270 0.1195158739 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
16 Hb_000613_220 0.1200204664 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
17 Hb_000340_360 0.1217185064 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
18 Hb_013405_180 0.1217597487 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
19 Hb_005288_050 0.123015652 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
20 Hb_000227_320 0.123586933 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_019863_060 Hb_019863_060 Hb_000473_150 Hb_000473_150 Hb_019863_060--Hb_000473_150 Hb_000059_130 Hb_000059_130 Hb_019863_060--Hb_000059_130 Hb_002154_020 Hb_002154_020 Hb_019863_060--Hb_002154_020 Hb_002804_010 Hb_002804_010 Hb_019863_060--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_019863_060--Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_019863_060--Hb_002248_120 Hb_000473_150--Hb_000059_130 Hb_000413_250 Hb_000413_250 Hb_000473_150--Hb_000413_250 Hb_001951_100 Hb_001951_100 Hb_000473_150--Hb_001951_100 Hb_000445_130 Hb_000445_130 Hb_000473_150--Hb_000445_130 Hb_002918_320 Hb_002918_320 Hb_000473_150--Hb_002918_320 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_005288_050 Hb_005288_050 Hb_002804_010--Hb_005288_050 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_024714_070 Hb_024714_070 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_002387_040--Hb_024714_070 Hb_002387_040--Hb_000418_050 Hb_002387_040--Hb_005288_050 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_013405_180 Hb_013405_180 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33401 23.2764 8.83339 9.53918 1.8783 4.03707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65807 1.7233 1.93301 9.31079 11.7294

CAGE analysis