Hb_005288_050

Information

Type transcription factor
Description TF Family: SET
Location Contig5288: 16046-28778
Sequence    

Annotation

kegg
ID rcu:RCOM_0609780
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_012089364.1
description PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
swissprot
ID Q8W595
description Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=1 SV=2
trembl
ID B9S7M5
description Histone-lysine N-methyltransferase OS=Ricinus communis GN=RCOM_0609780 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase suvr4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47155: 15179-16169 , PASA_asmbl_47156: 18042-18527 , PASA_asmbl_47157: 18631-24190 , PASA_asmbl_47158: 18631-19758 , PASA_asmbl_47159: 19795-20041 , PASA_asmbl_47160: 20195-24190 , PASA_asmbl_47161: 28515-28769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_050 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
2 Hb_002804_010 0.0763691442 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
3 Hb_002387_040 0.0898467163 - - protein transporter, putative [Ricinus communis]
4 Hb_006794_020 0.0900811353 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
5 Hb_000227_320 0.0920017297 - - unnamed protein product [Vitis vinifera]
6 Hb_033363_010 0.0973141561 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
7 Hb_000270_700 0.1003695744 - - PREDICTED: protease Do-like 9 [Populus euphratica]
8 Hb_083078_010 0.1048299002 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
9 Hb_000418_050 0.1059914956 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
10 Hb_000613_220 0.1063256383 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
11 Hb_003964_110 0.1071559125 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
12 Hb_003725_010 0.1090634252 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
13 Hb_001133_090 0.1102725054 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
14 Hb_004800_130 0.1104911467 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
15 Hb_001408_020 0.1107237465 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
16 Hb_024714_070 0.1115212428 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
17 Hb_013358_060 0.1128437868 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
18 Hb_000665_260 0.1132139411 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
19 Hb_002248_120 0.1133500741 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_000331_100 0.115834202 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_050 Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_005288_050--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_005288_050--Hb_002387_040 Hb_006794_020 Hb_006794_020 Hb_005288_050--Hb_006794_020 Hb_000227_320 Hb_000227_320 Hb_005288_050--Hb_000227_320 Hb_033363_010 Hb_033363_010 Hb_005288_050--Hb_033363_010 Hb_000270_700 Hb_000270_700 Hb_005288_050--Hb_000270_700 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_024714_070 Hb_024714_070 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_002387_040--Hb_024714_070 Hb_002387_040--Hb_000418_050 Hb_013358_060 Hb_013358_060 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_000227_320--Hb_033363_010 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_033363_010--Hb_000072_020 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_000270_700--Hb_000418_050 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_000270_700--Hb_005885_030 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.797694 7.20306 5.35738 4.06677 1.25294 1.51236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4466 1.05429 0.720463 3.78701 3.54609

CAGE analysis