Hb_002918_320

Information

Type transcription factor
Description TF Family: HB
Location Contig2918: 253219-265651
Sequence    

Annotation

kegg
ID rcu:RCOM_1673230
description homeobox protein, putative
nr
ID XP_012091668.1
description PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21481 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeodomain-like transcriptional isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30630: 253220-265518 , PASA_asmbl_30631: 265558-265735 , PASA_asmbl_30632: 265762-265913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_320 0.0 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
2 Hb_008686_020 0.0613741866 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
3 Hb_000413_250 0.0701030114 - - Cysteine-rich RLK 29 [Theobroma cacao]
4 Hb_005765_040 0.0796386987 - - transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_004696_070 0.0842637781 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
6 Hb_001951_100 0.0869653091 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
7 Hb_001561_010 0.0914244349 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
8 Hb_004551_020 0.0925222709 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
9 Hb_021596_010 0.0940094741 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
10 Hb_012490_010 0.0941231934 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
11 Hb_002928_190 0.0956333684 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
12 Hb_006794_020 0.0972360593 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
13 Hb_000445_130 0.0980002367 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
14 Hb_002248_120 0.1000637538 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_000367_020 0.1009260792 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
16 Hb_000200_110 0.1018506745 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
17 Hb_159295_010 0.103339315 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_000331_100 0.1037205979 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
19 Hb_012368_100 0.1037825587 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
20 Hb_002005_030 0.1043383876 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_320 Hb_002918_320 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_000413_250 Hb_000413_250 Hb_002918_320--Hb_000413_250 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_012490_010 Hb_012490_010 Hb_008686_020--Hb_012490_010 Hb_008686_020--Hb_001951_100 Hb_002928_190 Hb_002928_190 Hb_008686_020--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_000243_400 Hb_000243_400 Hb_000413_250--Hb_000243_400 Hb_000413_250--Hb_004696_070 Hb_000413_250--Hb_001951_100 Hb_000133_090 Hb_000133_090 Hb_000413_250--Hb_000133_090 Hb_000331_100 Hb_000331_100 Hb_000413_250--Hb_000331_100 Hb_159295_010 Hb_159295_010 Hb_005765_040--Hb_159295_010 Hb_011249_060 Hb_011249_060 Hb_005765_040--Hb_011249_060 Hb_001341_160 Hb_001341_160 Hb_005765_040--Hb_001341_160 Hb_009302_030 Hb_009302_030 Hb_005765_040--Hb_009302_030 Hb_003604_050 Hb_003604_050 Hb_005765_040--Hb_003604_050 Hb_004696_070--Hb_012490_010 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_020805_150 Hb_020805_150 Hb_004696_070--Hb_020805_150 Hb_004696_070--Hb_001951_100 Hb_004696_070--Hb_000331_100 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_001561_010--Hb_002928_190 Hb_001561_010--Hb_008686_020 Hb_001561_010--Hb_001951_100 Hb_001561_010--Hb_004696_070 Hb_003605_220 Hb_003605_220 Hb_001561_010--Hb_003605_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7684 47.5797 16.839 16.6002 11.78 10.2584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84453 4.25671 6.89266 19.5295 27.9328

CAGE analysis