Hb_001561_010

Information

Type -
Description -
Location Contig1561: 35321-44336
Sequence    

Annotation

kegg
ID rcu:RCOM_0745050
description hypothetical protein
nr
ID XP_012073430.1
description PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06636 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13553: 37920-40865 , PASA_asmbl_13554: 37899-40063 , PASA_asmbl_13556: 42264-42508 , PASA_asmbl_13557: 43262-43482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001561_010 0.0 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
2 Hb_002928_190 0.0908033295 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
3 Hb_002918_320 0.0914244349 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
4 Hb_008686_020 0.0923335979 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
5 Hb_001951_100 0.0983896362 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
6 Hb_004696_070 0.0993156091 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
7 Hb_003605_220 0.0993835331 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
8 Hb_000270_230 0.1000453963 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
9 Hb_012490_010 0.1020027484 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
10 Hb_000270_110 0.1050114379 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
11 Hb_005765_040 0.1052818108 - - transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_000413_250 0.1056062767 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_000059_130 0.1063254287 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
14 Hb_005649_080 0.108701522 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
15 Hb_000751_140 0.1121266963 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
16 Hb_000856_020 0.1122065062 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
17 Hb_159295_010 0.1137537758 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_002248_120 0.1137937349 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_001259_120 0.1143921986 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
20 Hb_172421_010 0.1167927238 - - cysteine protease [Hevea brasiliensis]

Gene co-expression network

sample Hb_001561_010 Hb_001561_010 Hb_002928_190 Hb_002928_190 Hb_001561_010--Hb_002928_190 Hb_002918_320 Hb_002918_320 Hb_001561_010--Hb_002918_320 Hb_008686_020 Hb_008686_020 Hb_001561_010--Hb_008686_020 Hb_001951_100 Hb_001951_100 Hb_001561_010--Hb_001951_100 Hb_004696_070 Hb_004696_070 Hb_001561_010--Hb_004696_070 Hb_003605_220 Hb_003605_220 Hb_001561_010--Hb_003605_220 Hb_012490_010 Hb_012490_010 Hb_002928_190--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_020805_150 Hb_020805_150 Hb_002928_190--Hb_020805_150 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_002928_190--Hb_008686_020 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_002918_320--Hb_008686_020 Hb_000413_250 Hb_000413_250 Hb_002918_320--Hb_000413_250 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_002918_320--Hb_004696_070 Hb_002918_320--Hb_001951_100 Hb_008686_020--Hb_012490_010 Hb_008686_020--Hb_001951_100 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_004696_070 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_004696_070--Hb_012490_010 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_004696_070--Hb_020805_150 Hb_000331_100 Hb_000331_100 Hb_004696_070--Hb_000331_100 Hb_000460_060 Hb_000460_060 Hb_003605_220--Hb_000460_060 Hb_004994_300 Hb_004994_300 Hb_003605_220--Hb_004994_300 Hb_003605_220--Hb_008686_020 Hb_003605_220--Hb_004696_070 Hb_003605_220--Hb_012490_010 Hb_003605_220--Hb_001951_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33345 30.6968 9.87759 12.7128 4.19811 8.40275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32083 2.2404 5.50394 12.8118 12.4126

CAGE analysis