Hb_005765_040

Information

Type -
Description -
Location Contig5765: 20803-28647
Sequence    

Annotation

kegg
ID rcu:RCOM_0122480
description transcription elongation factor s-II, putative
nr
ID XP_002532142.1
description transcription elongation factor s-II, putative [Ricinus communis]
swissprot
ID Q92576
description PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
trembl
ID B9T1M3
description Transcription elongation factor s-II, putative OS=Ricinus communis GN=RCOM_0122480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49681: 20914-24322 , PASA_asmbl_49682: 20928-21225 , PASA_asmbl_49684: 24367-28695 , PASA_asmbl_49685: 26918-27037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005765_040 0.0 - - transcription elongation factor s-II, putative [Ricinus communis]
2 Hb_159295_010 0.0554318762 - - hypothetical protein RCOM_1520720 [Ricinus communis]
3 Hb_011249_060 0.0736202667 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
4 Hb_001341_160 0.0761501671 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
5 Hb_009302_030 0.0766787951 - - hypothetical protein RCOM_1176340 [Ricinus communis]
6 Hb_002918_320 0.0796386987 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
7 Hb_003604_050 0.0864403569 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
8 Hb_000170_100 0.0874625411 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
9 Hb_000428_030 0.0875892287 - - hypothetical protein RCOM_1520720 [Ricinus communis]
10 Hb_002928_190 0.0877884377 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
11 Hb_002249_050 0.0878524444 - - Auxin response factor, putative [Ricinus communis]
12 Hb_001427_150 0.0882583286 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
13 Hb_009486_160 0.0887238341 - - PREDICTED: metacaspase-1 [Jatropha curcas]
14 Hb_044653_020 0.0895067995 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
15 Hb_002812_010 0.0895363981 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
16 Hb_012368_100 0.0899037983 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
17 Hb_000117_070 0.0899606045 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
18 Hb_012490_010 0.0907413034 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
19 Hb_000866_080 0.0909560718 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
20 Hb_004551_020 0.0912509719 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005765_040 Hb_005765_040 Hb_159295_010 Hb_159295_010 Hb_005765_040--Hb_159295_010 Hb_011249_060 Hb_011249_060 Hb_005765_040--Hb_011249_060 Hb_001341_160 Hb_001341_160 Hb_005765_040--Hb_001341_160 Hb_009302_030 Hb_009302_030 Hb_005765_040--Hb_009302_030 Hb_002918_320 Hb_002918_320 Hb_005765_040--Hb_002918_320 Hb_003604_050 Hb_003604_050 Hb_005765_040--Hb_003604_050 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_002812_010 Hb_002812_010 Hb_159295_010--Hb_002812_010 Hb_002249_050 Hb_002249_050 Hb_159295_010--Hb_002249_050 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_159295_010--Hb_011249_060 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_011249_060--Hb_009302_030 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_000413_250 Hb_000413_250 Hb_002918_320--Hb_000413_250 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_003604_050--Hb_001904_030 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72626 39.1883 17.3029 12.3424 11.5665 9.84944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60935 5.56435 7.03164 19.6947 16.6528

CAGE analysis