Hb_000010_420

Information

Type -
Description -
Location Contig10: 444219-477996
Sequence    

Annotation

kegg
ID tcc:TCM_014552
description Glucan synthase-like 8 isoform 1
nr
ID XP_010101941.1
description Callose synthase 10 [Morus notabilis]
swissprot
ID Q9SJM0
description Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5
trembl
ID W9RH25
description Callose synthase 10 OS=Morus notabilis GN=L484_008188 PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00190: 444057-478117 , PASA_asmbl_00192: 471094-471193 , PASA_asmbl_00193: 474391-477032 , PASA_asmbl_00194: 448709-448930 , PASA_asmbl_00195: 452071-452254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_420 0.0 - - Callose synthase 10 [Morus notabilis]
2 Hb_001259_120 0.0506738304 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
3 Hb_004645_070 0.062083794 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
4 Hb_001167_050 0.0661369543 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
5 Hb_001341_160 0.0670099228 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
6 Hb_001904_030 0.0723542517 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_009615_160 0.0740890848 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
8 Hb_002005_030 0.0746683082 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_000172_340 0.0757375675 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
10 Hb_000479_240 0.0765580232 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
11 Hb_003216_090 0.0785154947 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
12 Hb_170077_010 0.0786554031 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
13 Hb_007245_020 0.079067974 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
14 Hb_004517_020 0.0798520502 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
15 Hb_000331_580 0.080182945 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
16 Hb_044486_040 0.0812761398 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
17 Hb_000635_200 0.0816630134 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
18 Hb_003604_050 0.0824924618 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
19 Hb_006907_140 0.0829154451 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005568_040 0.0837829119 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_420 Hb_000010_420 Hb_001259_120 Hb_001259_120 Hb_000010_420--Hb_001259_120 Hb_004645_070 Hb_004645_070 Hb_000010_420--Hb_004645_070 Hb_001167_050 Hb_001167_050 Hb_000010_420--Hb_001167_050 Hb_001341_160 Hb_001341_160 Hb_000010_420--Hb_001341_160 Hb_001904_030 Hb_001904_030 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_001259_120--Hb_004645_070 Hb_001257_100 Hb_001257_100 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001259_120--Hb_001167_050 Hb_005568_040 Hb_005568_040 Hb_004645_070--Hb_005568_040 Hb_000479_240 Hb_000479_240 Hb_004645_070--Hb_000479_240 Hb_000331_580 Hb_000331_580 Hb_004645_070--Hb_000331_580 Hb_000635_200 Hb_000635_200 Hb_004645_070--Hb_000635_200 Hb_004645_070--Hb_001167_050 Hb_001167_050--Hb_000331_580 Hb_001167_050--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_001167_050--Hb_012286_040 Hb_001951_170 Hb_001951_170 Hb_001167_050--Hb_001951_170 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_001904_030--Hb_000172_340 Hb_001904_030--Hb_000479_240 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_001329_200 Hb_001329_200 Hb_009615_160--Hb_001329_200 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_005074_020 Hb_005074_020 Hb_009615_160--Hb_005074_020 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.12456 30.9432 17.7841 21.8683 12.6505 14.2262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09601 6.10878 9.37032 22.6863 15.9784

CAGE analysis