Hb_001167_050

Information

Type -
Description -
Location Contig1167: 50764-60094
Sequence    

Annotation

kegg
ID tcc:TCM_038909
description Calmodulin-binding protein isoform 1
nr
ID XP_012089652.1
description PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
swissprot
ID Q9FKL6
description Calmodulin-binding protein 60 B OS=Arabidopsis thaliana GN=CBP60B PE=2 SV=1
trembl
ID A0A067JGF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01764 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05113: 50333-60282 , PASA_asmbl_05114: 50302-60103 , PASA_asmbl_05116: 54096-54536
cDNA
(Sanger)
(ID:Location)		 047_K08.ab1: 55082-60282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001167_050 0.0 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
2 Hb_000331_580 0.05763443 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
3 Hb_005568_040 0.0619087238 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
4 Hb_000010_420 0.0661369543 - - Callose synthase 10 [Morus notabilis]
5 Hb_004645_070 0.066404521 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
6 Hb_012286_040 0.0674819727 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
7 Hb_001951_170 0.0676198759 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
8 Hb_003216_090 0.0694225047 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
9 Hb_000479_240 0.0727844757 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
10 Hb_000003_100 0.0737979072 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
11 Hb_006531_020 0.0757723567 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
12 Hb_002889_020 0.0770008083 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
13 Hb_031527_030 0.0777415885 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
14 Hb_000008_240 0.07779872 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000347_390 0.0791739182 - - PREDICTED: exportin-T [Jatropha curcas]
16 Hb_007245_020 0.0796594906 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
17 Hb_005074_020 0.0807388068 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
18 Hb_012092_060 0.0808102404 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
19 Hb_001259_120 0.0828533303 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
20 Hb_123531_010 0.083599534 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001167_050 Hb_001167_050 Hb_000331_580 Hb_000331_580 Hb_001167_050--Hb_000331_580 Hb_005568_040 Hb_005568_040 Hb_001167_050--Hb_005568_040 Hb_000010_420 Hb_000010_420 Hb_001167_050--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_001167_050--Hb_004645_070 Hb_012286_040 Hb_012286_040 Hb_001167_050--Hb_012286_040 Hb_001951_170 Hb_001951_170 Hb_001167_050--Hb_001951_170 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_000331_580--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_005568_040--Hb_004645_070 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_001259_120 Hb_001259_120 Hb_000010_420--Hb_001259_120 Hb_000010_420--Hb_004645_070 Hb_001341_160 Hb_001341_160 Hb_000010_420--Hb_001341_160 Hb_001904_030 Hb_001904_030 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_004645_070--Hb_000479_240 Hb_004645_070--Hb_000331_580 Hb_000635_200 Hb_000635_200 Hb_004645_070--Hb_000635_200 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_012286_040--Hb_000003_100 Hb_002890_130 Hb_002890_130 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_001951_170--Hb_006531_020 Hb_001951_170--Hb_002007_110 Hb_001951_170--Hb_000331_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8204 64.3934 29.8482 45.1946 21.6793 34.1973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.661 17.9103 23.9394 53.9525 37.4029

CAGE analysis