Hb_002005_030

Information

Type -
Description -
Location Contig2005: 35702-45085
Sequence    

Annotation

kegg
ID rcu:RCOM_0634380
description hypothetical protein
nr
ID XP_012091905.1
description PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21676 PE=4 SV=1
Gene Ontology
ID GO:0005515
description kinase-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20302: 35961-45074 , PASA_asmbl_20303: 35961-45074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_030 0.0 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
2 Hb_000172_340 0.0578141849 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
3 Hb_006907_140 0.0603576386 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001341_160 0.0729799163 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
5 Hb_000010_420 0.0746683082 - - Callose synthase 10 [Morus notabilis]
6 Hb_001904_030 0.0788791759 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_007245_020 0.0791615029 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
8 Hb_003604_050 0.0795178009 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
9 Hb_001259_120 0.080708033 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
10 Hb_004223_160 0.0826116952 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
11 Hb_044486_040 0.0852096976 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
12 Hb_004109_380 0.0858658256 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
13 Hb_000170_100 0.0865851306 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
14 Hb_000331_100 0.0867481433 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
15 Hb_001646_010 0.0871674488 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
16 Hb_123531_010 0.0871838331 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
17 Hb_000428_030 0.0888228184 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_000331_580 0.089364642 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
19 Hb_001226_110 0.0901785539 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
20 Hb_002928_190 0.0915960153 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]

Gene co-expression network

sample Hb_002005_030 Hb_002005_030 Hb_000172_340 Hb_000172_340 Hb_002005_030--Hb_000172_340 Hb_006907_140 Hb_006907_140 Hb_002005_030--Hb_006907_140 Hb_001341_160 Hb_001341_160 Hb_002005_030--Hb_001341_160 Hb_000010_420 Hb_000010_420 Hb_002005_030--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_002005_030--Hb_001904_030 Hb_007245_020 Hb_007245_020 Hb_002005_030--Hb_007245_020 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_001414_040 Hb_001414_040 Hb_006907_140--Hb_001414_040 Hb_006907_140--Hb_001341_160 Hb_006907_140--Hb_000172_340 Hb_006907_140--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_006907_140--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_001341_160--Hb_000172_340 Hb_001341_160--Hb_000010_420 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_001259_120 Hb_001259_120 Hb_000010_420--Hb_001259_120 Hb_000010_420--Hb_004645_070 Hb_001167_050 Hb_001167_050 Hb_000010_420--Hb_001167_050 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_001904_030--Hb_005832_010 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_002357_070 Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_007245_020--Hb_123531_010 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.80423 22.5746 9.15326 15.0386 9.00002 8.87368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8519 3.00913 4.34589 15.8754 14.8719

CAGE analysis