Hb_015183_100

Information

Type -
Description -
Location Contig15183: 76082-80580
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04830g
description POPTRDRAFT_563828; ankyrin repeat family protein
nr
ID XP_012073180.1
description PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9HM28
description Ankyrin repeat family protein OS=Populus trichocarpa GN=POPTR_0008s04830g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ankyrin repeat-containing protein at3g12360-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12924: 76090-78049 , PASA_asmbl_12925: 76154-80428 , PASA_asmbl_12926: 78065-78515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015183_100 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
2 Hb_003142_040 0.0696706815 - - Sf3a3 [Gossypium arboreum]
3 Hb_001171_030 0.0701804542 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
4 Hb_011249_060 0.0733792208 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
5 Hb_002968_070 0.0736450742 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
6 Hb_012940_040 0.0756090485 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
7 Hb_001341_160 0.0779468228 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
8 Hb_000866_080 0.0785017261 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
9 Hb_000977_300 0.0814084459 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
10 Hb_001221_090 0.0814162825 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
11 Hb_002016_060 0.081887784 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
12 Hb_000189_630 0.0837396457 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_002903_140 0.0847102128 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
14 Hb_002045_250 0.0878331905 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
15 Hb_000373_170 0.0885295461 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
16 Hb_000174_150 0.089086938 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
17 Hb_004310_040 0.0898460482 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001953_120 0.0904155121 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
19 Hb_000917_100 0.0920659003 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
20 Hb_001723_140 0.0945394109 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_015183_100 Hb_015183_100 Hb_003142_040 Hb_003142_040 Hb_015183_100--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_015183_100--Hb_001171_030 Hb_011249_060 Hb_011249_060 Hb_015183_100--Hb_011249_060 Hb_002968_070 Hb_002968_070 Hb_015183_100--Hb_002968_070 Hb_012940_040 Hb_012940_040 Hb_015183_100--Hb_012940_040 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160 Hb_003142_040--Hb_002968_070 Hb_003142_040--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_001171_030--Hb_002968_070 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_002968_070--Hb_001953_120 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_012940_040--Hb_002968_070 Hb_012940_040--Hb_002016_090 Hb_000260_770 Hb_000260_770 Hb_012940_040--Hb_000260_770 Hb_012940_040--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.7221 106.702 69.2118 48.5926 36.4883 41.2942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6503 12.346 18.6365 69.7075 46.6719

CAGE analysis