Hb_012940_040

Information

Type -
Description -
Location Contig12940: 35474-40583
Sequence    

Annotation

kegg
ID rcu:RCOM_1408100
description Splicing factor, arginine/serine-rich, putative
nr
ID XP_002523584.1
description Splicing factor, arginine/serine-rich, putative [Ricinus communis]
swissprot
ID Q8N2M8
description CLK4-associating serine/arginine rich protein OS=Homo sapiens GN=CLASRP PE=1 SV=4
trembl
ID B9SC65
description Splicing factor, arginine/serine-rich, putative OS=Ricinus communis GN=RCOM_1408100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08840: 35940-40496 , PASA_asmbl_08841: 37356-37517 , PASA_asmbl_08842: 38614-39548 , PASA_asmbl_08843: 38677-38964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012940_040 0.0 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
2 Hb_002968_070 0.0699176247 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
3 Hb_002016_090 0.0705366206 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
4 Hb_000260_770 0.071539885 - - er lumen protein retaining receptor, putative [Ricinus communis]
5 Hb_001171_030 0.0736986195 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
6 Hb_015183_100 0.0756090485 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
7 Hb_000174_150 0.0769497672 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
8 Hb_004724_370 0.0771058705 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
9 Hb_003142_040 0.0785041593 - - Sf3a3 [Gossypium arboreum]
10 Hb_000340_030 0.0833328983 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
11 Hb_000139_320 0.0846966082 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
12 Hb_003711_010 0.0848956993 - - isopropylmalate synthase, putative [Ricinus communis]
13 Hb_000373_170 0.0870317881 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
14 Hb_000189_630 0.0894665547 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_000856_300 0.0924412691 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
16 Hb_001584_350 0.0932099562 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
17 Hb_001373_160 0.0938622633 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
18 Hb_000529_060 0.0944516107 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
19 Hb_004319_050 0.0947035969 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
20 Hb_004319_070 0.0962437643 - - hypothetical protein RCOM_0852460 [Ricinus communis]

Gene co-expression network

sample Hb_012940_040 Hb_012940_040 Hb_002968_070 Hb_002968_070 Hb_012940_040--Hb_002968_070 Hb_002016_090 Hb_002016_090 Hb_012940_040--Hb_002016_090 Hb_000260_770 Hb_000260_770 Hb_012940_040--Hb_000260_770 Hb_001171_030 Hb_001171_030 Hb_012940_040--Hb_001171_030 Hb_015183_100 Hb_015183_100 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_003142_040 Hb_003142_040 Hb_002968_070--Hb_003142_040 Hb_002968_070--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_002968_070--Hb_001953_120 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_000340_030 Hb_000340_030 Hb_002016_090--Hb_000340_030 Hb_002016_090--Hb_003142_040 Hb_002016_090--Hb_000373_170 Hb_003711_010 Hb_003711_010 Hb_002016_090--Hb_003711_010 Hb_000994_020 Hb_000994_020 Hb_000260_770--Hb_000994_020 Hb_000139_320 Hb_000139_320 Hb_000260_770--Hb_000139_320 Hb_003470_040 Hb_003470_040 Hb_000260_770--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000260_770--Hb_004319_050 Hb_004724_370 Hb_004724_370 Hb_000260_770--Hb_004724_370 Hb_001171_030--Hb_003142_040 Hb_001723_140 Hb_001723_140 Hb_001171_030--Hb_001723_140 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_015183_100--Hb_003142_040 Hb_015183_100--Hb_001171_030 Hb_011249_060 Hb_011249_060 Hb_015183_100--Hb_011249_060 Hb_015183_100--Hb_002968_070 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160 Hb_001584_350 Hb_001584_350 Hb_000174_150--Hb_001584_350 Hb_000174_150--Hb_000977_300 Hb_000174_150--Hb_000139_320 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_000174_150--Hb_001171_030 Hb_000174_150--Hb_000340_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1917 22.7932 19.9207 11.1023 8.73622 8.33738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58455 5.72722 4.33819 19.7995 10.2626

CAGE analysis