Hb_013405_180

Information

Type -
Description -
Location Contig13405: 111781-114824
Sequence    

Annotation

kegg
ID rcu:RCOM_1583050
description hypothetical protein
nr
ID XP_012090213.1
description PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
swissprot
ID Q9SRE5
description Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=2 SV=1
trembl
ID A0A067JHK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26079 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09678: 111826-114854 , PASA_asmbl_09679: 112116-112375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_180 0.0 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
2 Hb_002248_120 0.0744274515 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_000008_280 0.0744552857 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
4 Hb_000170_160 0.089467564 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
5 Hb_000340_360 0.0920717947 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
6 Hb_001998_210 0.097133102 - - unnamed protein product [Coffea canephora]
7 Hb_001951_100 0.0973592922 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
8 Hb_008686_020 0.0998315168 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
9 Hb_005885_030 0.1055762303 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_001269_050 0.1066658614 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
11 Hb_172421_010 0.1086405651 - - cysteine protease [Hevea brasiliensis]
12 Hb_008642_060 0.1093165287 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
13 Hb_002078_470 0.109560682 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
14 Hb_013358_060 0.1100858067 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_011457_140 0.1107783186 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
16 Hb_002918_320 0.1121573157 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
17 Hb_000331_100 0.1127000794 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_000853_220 0.112712932 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
19 Hb_005183_140 0.1136034001 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
20 Hb_000844_050 0.1139365821 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_013405_180 Hb_013405_180 Hb_002248_120 Hb_002248_120 Hb_013405_180--Hb_002248_120 Hb_000008_280 Hb_000008_280 Hb_013405_180--Hb_000008_280 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_008642_060 Hb_008642_060 Hb_000008_280--Hb_008642_060 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000358_220 Hb_000358_220 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_011457_140 Hb_011457_140 Hb_000008_280--Hb_011457_140 Hb_003750_130 Hb_003750_130 Hb_000170_160--Hb_003750_130 Hb_000170_160--Hb_000008_280 Hb_000170_160--Hb_001998_210 Hb_021079_020 Hb_021079_020 Hb_000170_160--Hb_021079_020 Hb_000673_010 Hb_000673_010 Hb_000170_160--Hb_000673_010 Hb_014006_010 Hb_014006_010 Hb_000340_360--Hb_014006_010 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_000340_360--Hb_001951_100 Hb_013399_090 Hb_013399_090 Hb_000340_360--Hb_013399_090 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001439_070 Hb_001439_070 Hb_001998_210--Hb_001439_070 Hb_001059_060 Hb_001059_060 Hb_001998_210--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001998_210--Hb_004052_110 Hb_009078_020 Hb_009078_020 Hb_001998_210--Hb_009078_020 Hb_001998_210--Hb_000300_030 Hb_008686_020 Hb_008686_020 Hb_001951_100--Hb_008686_020 Hb_000367_020 Hb_000367_020 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66699 24.1721 12.9209 13.3188 4.99151 6.70212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52026 3.44083 2.54664 7.45859 20.0866

CAGE analysis