Hb_000613_220

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig613: 171465-174238
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22350g
description POPTRDRAFT_755797; Disease resistance protein RPM1
nr
ID XP_012081501.1
description PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067K1D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18516 PE=4 SV=1
Gene Ontology
ID GO:0005886
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51092: 171771-172031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_220 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
2 Hb_159295_010 0.0973528758 - - hypothetical protein RCOM_1520720 [Ricinus communis]
3 Hb_002249_050 0.0974731022 - - Auxin response factor, putative [Ricinus communis]
4 Hb_002387_040 0.1047072844 - - protein transporter, putative [Ricinus communis]
5 Hb_005288_050 0.1063256383 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
6 Hb_002804_010 0.1091000882 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
7 Hb_006794_020 0.1120569018 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
8 Hb_010775_010 0.1130497051 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
9 Hb_003216_060 0.1145227981 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
10 Hb_001951_240 0.1145572322 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
11 Hb_004324_060 0.1151106486 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_004800_130 0.1159905453 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
13 Hb_019863_060 0.1200204664 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
14 Hb_017914_010 0.1200771217 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
15 Hb_000133_090 0.1214982915 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
16 Hb_172421_010 0.1216437798 - - cysteine protease [Hevea brasiliensis]
17 Hb_002154_020 0.1220637153 - - protein with unknown function [Ricinus communis]
18 Hb_005765_040 0.1223191144 - - transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_000059_130 0.1229060835 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
20 Hb_001911_010 0.1233742894 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000613_220 Hb_000613_220 Hb_159295_010 Hb_159295_010 Hb_000613_220--Hb_159295_010 Hb_002249_050 Hb_002249_050 Hb_000613_220--Hb_002249_050 Hb_002387_040 Hb_002387_040 Hb_000613_220--Hb_002387_040 Hb_005288_050 Hb_005288_050 Hb_000613_220--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_000613_220--Hb_002804_010 Hb_006794_020 Hb_006794_020 Hb_000613_220--Hb_006794_020 Hb_005765_040 Hb_005765_040 Hb_159295_010--Hb_005765_040 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_002812_010 Hb_002812_010 Hb_159295_010--Hb_002812_010 Hb_159295_010--Hb_002249_050 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_011249_060 Hb_011249_060 Hb_159295_010--Hb_011249_060 Hb_002249_050--Hb_005765_040 Hb_002400_160 Hb_002400_160 Hb_002249_050--Hb_002400_160 Hb_002154_020 Hb_002154_020 Hb_002249_050--Hb_002154_020 Hb_001488_040 Hb_001488_040 Hb_002249_050--Hb_001488_040 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_002387_040--Hb_005288_050 Hb_002387_040--Hb_002804_010 Hb_005288_050--Hb_002804_010 Hb_005288_050--Hb_006794_020 Hb_000227_320 Hb_000227_320 Hb_005288_050--Hb_000227_320 Hb_033363_010 Hb_033363_010 Hb_005288_050--Hb_033363_010 Hb_000270_700 Hb_000270_700 Hb_005288_050--Hb_000270_700 Hb_002804_010--Hb_000418_050 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240 Hb_013358_060 Hb_013358_060 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0434772 0.440739 0.194246 0.146243 0.096667 0.0519742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0331489 0.0521697 0.0248932 0.165665 0.166555

CAGE analysis