Hb_007313_070

Information

Type -
Description -
Location Contig7313: 62003-64396
Sequence    

Annotation

kegg
ID rcu:RCOM_1429770
description Gibberellin receptor GID1, putative
nr
ID XP_012089139.1
description PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
swissprot
ID Q940G6
description Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1
trembl
ID A0A067JI60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23405 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gibberellin receptor gid1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56026: 61580-64349 , PASA_asmbl_56027: 63507-63907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_070 0.0 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
2 Hb_048755_020 0.0461885126 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
3 Hb_004994_300 0.0936759465 - - synaptotagmin, putative [Ricinus communis]
4 Hb_003605_220 0.1054324582 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
5 Hb_001437_010 0.1065368733 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
6 Hb_172421_010 0.1078041942 - - cysteine protease [Hevea brasiliensis]
7 Hb_002248_120 0.1085989525 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_002400_160 0.1114162843 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
9 Hb_007849_050 0.1123131007 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_001410_130 0.1200662375 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
11 Hb_003001_070 0.1223554293 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
12 Hb_000753_140 0.1236430769 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
13 Hb_004032_310 0.124384549 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
14 Hb_143766_030 0.1262725345 - - protein with unknown function [Ricinus communis]
15 Hb_002482_030 0.1282183406 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
16 Hb_002154_020 0.1283688463 - - protein with unknown function [Ricinus communis]
17 Hb_002387_040 0.1323861935 - - protein transporter, putative [Ricinus communis]
18 Hb_000071_140 0.1334089491 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
19 Hb_008686_020 0.1342512486 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
20 Hb_004324_060 0.1345210619 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_007313_070 Hb_007313_070 Hb_048755_020 Hb_048755_020 Hb_007313_070--Hb_048755_020 Hb_004994_300 Hb_004994_300 Hb_007313_070--Hb_004994_300 Hb_003605_220 Hb_003605_220 Hb_007313_070--Hb_003605_220 Hb_001437_010 Hb_001437_010 Hb_007313_070--Hb_001437_010 Hb_172421_010 Hb_172421_010 Hb_007313_070--Hb_172421_010 Hb_002248_120 Hb_002248_120 Hb_007313_070--Hb_002248_120 Hb_048755_020--Hb_001437_010 Hb_000071_140 Hb_000071_140 Hb_048755_020--Hb_000071_140 Hb_000045_260 Hb_000045_260 Hb_048755_020--Hb_000045_260 Hb_048755_020--Hb_004994_300 Hb_000186_200 Hb_000186_200 Hb_048755_020--Hb_000186_200 Hb_004994_300--Hb_003605_220 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_004994_300--Hb_172421_010 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120 Hb_000460_060 Hb_000460_060 Hb_003605_220--Hb_000460_060 Hb_008686_020 Hb_008686_020 Hb_003605_220--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_003605_220--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_003605_220--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_003605_220--Hb_001951_100 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_001437_010--Hb_000071_140 Hb_004108_240 Hb_004108_240 Hb_001437_010--Hb_004108_240 Hb_004324_060 Hb_004324_060 Hb_172421_010--Hb_004324_060 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_002248_120--Hb_004696_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5679 136.374 54.2336 45.1437 17.9745 17.9058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0575 13.0617 18.5511 16.8236 53.9162

CAGE analysis