Hb_004324_060

Information

Type -
Description -
Location Contig4324: 31763-39106
Sequence    

Annotation

kegg
ID rcu:RCOM_1579800
description Cyclic nucleotide-gated ion channel, putative
nr
ID XP_002513573.1
description Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
swissprot
ID O65717
description Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1
trembl
ID B9RIK4
description Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_1579800 PE=4 SV=1
Gene Ontology
ID GO:0005221
description cyclic nucleotide-gated ion channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42305: 31944-37702 , PASA_asmbl_42306: 33047-33465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_060 0.0 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
2 Hb_003895_020 0.079982865 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
3 Hb_002774_150 0.0844498204 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
4 Hb_172421_010 0.091694258 - - cysteine protease [Hevea brasiliensis]
5 Hb_000866_080 0.0920913988 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
6 Hb_002942_110 0.0986943618 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
7 Hb_012038_010 0.1013780281 - - phospholipid-transporting atpase, putative [Ricinus communis]
8 Hb_007031_040 0.1017266205 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
9 Hb_159295_010 0.1026118023 - - hypothetical protein RCOM_1520720 [Ricinus communis]
10 Hb_001911_010 0.1040078539 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
11 Hb_002918_320 0.1055164734 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
12 Hb_007849_050 0.1055941165 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
13 Hb_004195_120 0.1089756915 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_005765_040 0.1135410825 - - transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_020178_050 0.113628765 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
16 Hb_004032_310 0.1138243144 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
17 Hb_001410_130 0.1140732692 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
18 Hb_044653_020 0.1141922147 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
19 Hb_000613_220 0.1151106486 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_000751_140 0.1162023595 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_060 Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_004324_060--Hb_003895_020 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_172421_010 Hb_172421_010 Hb_004324_060--Hb_172421_010 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_002942_110 Hb_002942_110 Hb_004324_060--Hb_002942_110 Hb_012038_010 Hb_012038_010 Hb_004324_060--Hb_012038_010 Hb_003895_020--Hb_000866_080 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_002485_040 Hb_002485_040 Hb_002774_150--Hb_002485_040 Hb_002774_150--Hb_012038_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_012753_040 Hb_012753_040 Hb_002774_150--Hb_012753_040 Hb_002248_120 Hb_002248_120 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_172421_010--Hb_004994_300 Hb_007313_070 Hb_007313_070 Hb_172421_010--Hb_007313_070 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180 Hb_011249_060 Hb_011249_060 Hb_000866_080--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_000917_100 Hb_000917_100 Hb_000866_080--Hb_000917_100 Hb_004310_040 Hb_004310_040 Hb_000866_080--Hb_004310_040 Hb_004195_120 Hb_004195_120 Hb_002942_110--Hb_004195_120 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_002942_110--Hb_003895_020 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_012038_010--Hb_003895_020 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9344 67.1537 28.5925 19.7786 18.5044 13.1098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.00382 3.10192 5.51252 17.6617 23.4035

CAGE analysis