Hb_009674_080

Information

Type -
Description -
Location Contig9674: 128839-131229
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00850g
description hypothetical protein
nr
ID XP_012090468.1
description PREDICTED: branchpoint-bridging protein [Jatropha curcas]
swissprot
ID P0CO44
description Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=BBP PE=3 SV=1
trembl
ID A0A067JR06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26276 PE=4 SV=1
Gene Ontology
ID GO:0000166
description branchpoint-bridging protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63914: 127459-131171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009674_080 0.0 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
2 Hb_012038_010 0.1013109617 - - phospholipid-transporting atpase, putative [Ricinus communis]
3 Hb_000526_060 0.1032529527 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
4 Hb_003120_070 0.1064453789 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000117_070 0.1086485693 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
6 Hb_120470_010 0.1099168674 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
7 Hb_012753_040 0.1162282263 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
8 Hb_000334_130 0.116332379 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
9 Hb_000086_050 0.1164106561 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
10 Hb_004324_060 0.1165292025 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_002687_090 0.1194491607 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
12 Hb_002073_280 0.1197502576 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
13 Hb_000896_060 0.1209000374 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_004800_240 0.1228028021 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
15 Hb_002387_070 0.1244846168 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
16 Hb_014720_020 0.1256405962 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
17 Hb_044653_020 0.1275708555 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
18 Hb_003895_020 0.1287245628 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
19 Hb_012368_100 0.1292480231 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
20 Hb_011791_020 0.1293072589 - - hypothetical protein Csa_6G486930 [Cucumis sativus]

Gene co-expression network

sample Hb_009674_080 Hb_009674_080 Hb_012038_010 Hb_012038_010 Hb_009674_080--Hb_012038_010 Hb_000526_060 Hb_000526_060 Hb_009674_080--Hb_000526_060 Hb_003120_070 Hb_003120_070 Hb_009674_080--Hb_003120_070 Hb_000117_070 Hb_000117_070 Hb_009674_080--Hb_000117_070 Hb_120470_010 Hb_120470_010 Hb_009674_080--Hb_120470_010 Hb_012753_040 Hb_012753_040 Hb_009674_080--Hb_012753_040 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_002942_110 Hb_002942_110 Hb_012038_010--Hb_002942_110 Hb_012038_010--Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_000526_060--Hb_000896_060 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130 Hb_014720_020 Hb_014720_020 Hb_003120_070--Hb_014720_020 Hb_002005_120 Hb_002005_120 Hb_003120_070--Hb_002005_120 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_003120_070--Hb_000526_060 Hb_003120_070--Hb_000117_070 Hb_000197_290 Hb_000197_290 Hb_003120_070--Hb_000197_290 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_011791_020 Hb_011791_020 Hb_120470_010--Hb_011791_020 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_004032_040 Hb_004032_040 Hb_120470_010--Hb_004032_040 Hb_000015_160 Hb_000015_160 Hb_012753_040--Hb_000015_160 Hb_000991_050 Hb_000991_050 Hb_012753_040--Hb_000991_050 Hb_002774_150 Hb_002774_150 Hb_012753_040--Hb_002774_150 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_012753_040--Hb_003120_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8688 74.1194 25.0708 19.0771 43.1716 19.8263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15585 3.83812 6.89302 24.1217 32.3207

CAGE analysis