Hb_014720_020

Information

Type -
Description -
Location Contig14720: 9654-77802
Sequence    

Annotation

kegg
ID rcu:RCOM_1510550
description ataxia telangiectasia mutated, putative (EC:2.7.11.1)
nr
ID XP_012080064.1
description PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
swissprot
ID Q9M3G7
description Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1
trembl
ID A0A067K4N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11473 PE=4 SV=1
Gene Ontology
ID GO:0005524
description serine threonine-protein kinase atm

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11942: 9682-20004 , PASA_asmbl_11943: 20736-21166 , PASA_asmbl_11944: 21583-23190 , PASA_asmbl_11945: 23408-30072 , PASA_asmbl_11946: 28242-29731 , PASA_asmbl_11947: 34672-41467 , PASA_asmbl_11948: 42212-42670 , PASA_asmbl_11949: 61521-66800 , PASA_asmbl_11950: 74918-75579 , PASA_asmbl_11951: 76254-76991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_020 0.0 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
2 Hb_003120_070 0.0537592365 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001221_090 0.0685770542 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
4 Hb_003604_050 0.0696853166 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
5 Hb_002005_120 0.0712033526 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
6 Hb_007818_030 0.0739610993 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
7 Hb_001904_030 0.0742109832 - - PREDICTED: importin-5 [Jatropha curcas]
8 Hb_005832_010 0.0743410941 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
9 Hb_004223_160 0.0764266408 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
10 Hb_002027_280 0.0787402628 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
11 Hb_011202_030 0.080146168 - - arsenite-resistance protein, putative [Ricinus communis]
12 Hb_000526_060 0.0843196005 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
13 Hb_001341_160 0.0866660763 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
14 Hb_000334_130 0.0867215005 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
15 Hb_000117_070 0.088220501 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
16 Hb_000703_130 0.0888722291 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
17 Hb_002092_070 0.0891067579 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
18 Hb_000172_340 0.0896295853 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
19 Hb_000434_070 0.0912618565 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
20 Hb_000479_240 0.0916426383 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_014720_020 Hb_014720_020 Hb_003120_070 Hb_003120_070 Hb_014720_020--Hb_003120_070 Hb_001221_090 Hb_001221_090 Hb_014720_020--Hb_001221_090 Hb_003604_050 Hb_003604_050 Hb_014720_020--Hb_003604_050 Hb_002005_120 Hb_002005_120 Hb_014720_020--Hb_002005_120 Hb_007818_030 Hb_007818_030 Hb_014720_020--Hb_007818_030 Hb_001904_030 Hb_001904_030 Hb_014720_020--Hb_001904_030 Hb_003120_070--Hb_002005_120 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_000526_060 Hb_000526_060 Hb_003120_070--Hb_000526_060 Hb_000117_070 Hb_000117_070 Hb_003120_070--Hb_000117_070 Hb_000197_290 Hb_000197_290 Hb_003120_070--Hb_000197_290 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_065500_030 Hb_065500_030 Hb_002005_120--Hb_065500_030 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_007426_060 Hb_007426_060 Hb_007818_030--Hb_007426_060 Hb_000703_130 Hb_000703_130 Hb_007818_030--Hb_000703_130 Hb_001673_050 Hb_001673_050 Hb_007818_030--Hb_001673_050 Hb_007818_030--Hb_001221_090 Hb_007818_030--Hb_000526_060 Hb_000176_100 Hb_000176_100 Hb_007818_030--Hb_000176_100 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_001904_030--Hb_000479_240 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52959 5.24284 2.01715 2.35742 2.66812 2.18414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.934024 0.925424 0.562747 2.59523 2.68234

CAGE analysis