Hb_000751_140

Information

Type -
Description -
Location Contig751: 144944-154004
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14930g
description POPTRDRAFT_246517; hypothetical protein
nr
ID XP_012066239.1
description PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
swissprot
ID Q93YP4
description Clathrin interactor EPSIN 3 OS=Arabidopsis thaliana GN=EPSIN3 PE=2 SV=1
trembl
ID A0A067LFJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23811 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56857: 143972-154378 , PASA_asmbl_56858: 145335-153643 , PASA_asmbl_56859: 150426-150646 , PASA_asmbl_56861: 149148-149333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000751_140 0.0 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
2 Hb_044653_020 0.0880127136 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
3 Hb_003895_020 0.0903166048 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
4 Hb_003120_070 0.0919069142 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000334_130 0.0967681446 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
6 Hb_000117_070 0.0968108158 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_000635_200 0.0974460214 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
8 Hb_004162_120 0.0983980592 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
9 Hb_014720_020 0.1030989017 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
10 Hb_001488_270 0.1041108642 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_012038_010 0.1050736218 - - phospholipid-transporting atpase, putative [Ricinus communis]
12 Hb_012368_100 0.1064950349 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
13 Hb_003604_050 0.1079222998 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
14 Hb_001911_010 0.1087500149 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
15 Hb_000358_200 0.1094709254 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
16 Hb_001259_120 0.1100719212 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
17 Hb_000979_240 0.1104007689 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
18 Hb_000856_020 0.1108253403 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
19 Hb_000197_030 0.1108639316 - - hypothetical protein RCOM_1447500 [Ricinus communis]
20 Hb_002005_120 0.1109439338 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000751_140 Hb_000751_140 Hb_044653_020 Hb_044653_020 Hb_000751_140--Hb_044653_020 Hb_003895_020 Hb_003895_020 Hb_000751_140--Hb_003895_020 Hb_003120_070 Hb_003120_070 Hb_000751_140--Hb_003120_070 Hb_000334_130 Hb_000334_130 Hb_000751_140--Hb_000334_130 Hb_000117_070 Hb_000117_070 Hb_000751_140--Hb_000117_070 Hb_000635_200 Hb_000635_200 Hb_000751_140--Hb_000635_200 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_000896_060 Hb_000896_060 Hb_044653_020--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_000866_080 Hb_000866_080 Hb_003895_020--Hb_000866_080 Hb_004324_060 Hb_004324_060 Hb_003895_020--Hb_004324_060 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_014720_020 Hb_014720_020 Hb_003120_070--Hb_014720_020 Hb_002005_120 Hb_002005_120 Hb_003120_070--Hb_002005_120 Hb_000526_060 Hb_000526_060 Hb_003120_070--Hb_000526_060 Hb_003120_070--Hb_000117_070 Hb_000197_290 Hb_000197_290 Hb_003120_070--Hb_000197_290 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_001454_170 Hb_001454_170 Hb_000334_130--Hb_001454_170 Hb_004429_010 Hb_004429_010 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070 Hb_000117_070--Hb_000896_060 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_000526_060 Hb_120470_010 Hb_120470_010 Hb_000117_070--Hb_120470_010 Hb_000703_130 Hb_000703_130 Hb_000117_070--Hb_000703_130 Hb_004645_070 Hb_004645_070 Hb_000635_200--Hb_004645_070 Hb_000635_200--Hb_002092_070 Hb_000010_420 Hb_000010_420 Hb_000635_200--Hb_000010_420 Hb_002045_250 Hb_002045_250 Hb_000635_200--Hb_002045_250 Hb_000635_200--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000635_200--Hb_002284_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8997 53.6939 17.579 27.7978 18.6651 19.5818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36754 4.95444 7.24273 18.6949 20.4107

CAGE analysis