Hb_003120_070

Information

Type -
Description -
Location Contig3120: 28710-29974
Sequence    

Annotation

kegg
ID rcu:RCOM_1598660
description ATP binding protein, putative
nr
ID XP_002510571.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID B9R8C8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1598660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable boi-related e3 ubiquitin-protein ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33004: 28956-29398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_014720_020 0.0537592365 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
3 Hb_002005_120 0.087784669 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
4 Hb_000751_140 0.0919069142 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
5 Hb_000526_060 0.0928824055 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
6 Hb_000117_070 0.0953116145 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
7 Hb_000197_290 0.0957574497 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
8 Hb_000334_130 0.0978756103 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
9 Hb_003604_050 0.0985180322 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
10 Hb_001488_270 0.0998427111 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_000896_060 0.1002417778 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_011202_030 0.1005906396 - - arsenite-resistance protein, putative [Ricinus communis]
13 Hb_044653_020 0.1026008 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
14 Hb_009674_080 0.1064453789 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
15 Hb_012038_010 0.1066622179 - - phospholipid-transporting atpase, putative [Ricinus communis]
16 Hb_003895_020 0.1071712611 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
17 Hb_001221_090 0.1073881579 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_001904_030 0.1094194695 - - PREDICTED: importin-5 [Jatropha curcas]
19 Hb_002027_280 0.1100822187 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
20 Hb_007818_030 0.1100874417 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]

Gene co-expression network

sample Hb_003120_070 Hb_003120_070 Hb_014720_020 Hb_014720_020 Hb_003120_070--Hb_014720_020 Hb_002005_120 Hb_002005_120 Hb_003120_070--Hb_002005_120 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_000526_060 Hb_000526_060 Hb_003120_070--Hb_000526_060 Hb_000117_070 Hb_000117_070 Hb_003120_070--Hb_000117_070 Hb_000197_290 Hb_000197_290 Hb_003120_070--Hb_000197_290 Hb_001221_090 Hb_001221_090 Hb_014720_020--Hb_001221_090 Hb_003604_050 Hb_003604_050 Hb_014720_020--Hb_003604_050 Hb_014720_020--Hb_002005_120 Hb_007818_030 Hb_007818_030 Hb_014720_020--Hb_007818_030 Hb_001904_030 Hb_001904_030 Hb_014720_020--Hb_001904_030 Hb_065500_030 Hb_065500_030 Hb_002005_120--Hb_065500_030 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_044653_020 Hb_044653_020 Hb_000751_140--Hb_044653_020 Hb_003895_020 Hb_003895_020 Hb_000751_140--Hb_003895_020 Hb_000334_130 Hb_000334_130 Hb_000751_140--Hb_000334_130 Hb_000751_140--Hb_000117_070 Hb_000635_200 Hb_000635_200 Hb_000751_140--Hb_000635_200 Hb_000896_060 Hb_000896_060 Hb_000526_060--Hb_000896_060 Hb_000526_060--Hb_000117_070 Hb_000526_060--Hb_007818_030 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_007813_030 Hb_007813_030 Hb_000197_290--Hb_007813_030 Hb_001488_270 Hb_001488_270 Hb_000197_290--Hb_001488_270 Hb_000574_510 Hb_000574_510 Hb_000197_290--Hb_000574_510 Hb_000062_470 Hb_000062_470 Hb_000197_290--Hb_000062_470 Hb_003604_040 Hb_003604_040 Hb_000197_290--Hb_003604_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37288 5.87562 1.82509 2.37583 2.76055 2.45124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.747053 0.760442 0.448511 2.05195 2.85034

CAGE analysis