Hb_000197_290

Information

Type -
Description -
Location Contig197: 378076-383312
Sequence    

Annotation

kegg
ID rcu:RCOM_1448750
description ubiquitin-protein ligase, putative
nr
ID XP_012067219.1
description PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L029
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26775 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19784: 377859-383282 , PASA_asmbl_19785: 378347-378728 , PASA_asmbl_19786: 382831-383018 , PASA_asmbl_19788: 377861-378013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_290 0.0 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
2 Hb_007813_030 0.070361864 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
3 Hb_001488_270 0.0867542777 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_000574_510 0.0887753403 - - protein kinase, putative [Ricinus communis]
5 Hb_000062_470 0.0933520717 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
6 Hb_003604_040 0.0952706826 - - Serine/threonine-protein kinase sepA [Morus notabilis]
7 Hb_003120_070 0.0957574497 - - ATP binding protein, putative [Ricinus communis]
8 Hb_005214_150 0.0963989904 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
9 Hb_010417_060 0.0982520168 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
10 Hb_011671_230 0.0985058375 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000176_130 0.1006293511 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
12 Hb_001989_050 0.1036765993 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
13 Hb_001031_040 0.106010827 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000979_240 0.107984195 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
15 Hb_000422_110 0.1085403222 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
16 Hb_006787_060 0.1108090801 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
17 Hb_000661_200 0.1110032809 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
18 Hb_014720_020 0.1115094044 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
19 Hb_001231_030 0.1124514511 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
20 Hb_002044_170 0.1136718187 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]

Gene co-expression network

sample Hb_000197_290 Hb_000197_290 Hb_007813_030 Hb_007813_030 Hb_000197_290--Hb_007813_030 Hb_001488_270 Hb_001488_270 Hb_000197_290--Hb_001488_270 Hb_000574_510 Hb_000574_510 Hb_000197_290--Hb_000574_510 Hb_000062_470 Hb_000062_470 Hb_000197_290--Hb_000062_470 Hb_003604_040 Hb_003604_040 Hb_000197_290--Hb_003604_040 Hb_003120_070 Hb_003120_070 Hb_000197_290--Hb_003120_070 Hb_000661_200 Hb_000661_200 Hb_007813_030--Hb_000661_200 Hb_007813_030--Hb_000062_470 Hb_007813_030--Hb_000574_510 Hb_052764_060 Hb_052764_060 Hb_007813_030--Hb_052764_060 Hb_005104_010 Hb_005104_010 Hb_007813_030--Hb_005104_010 Hb_000176_130 Hb_000176_130 Hb_001488_270--Hb_000176_130 Hb_000265_090 Hb_000265_090 Hb_001488_270--Hb_000265_090 Hb_000358_200 Hb_000358_200 Hb_001488_270--Hb_000358_200 Hb_001488_270--Hb_007813_030 Hb_002027_280 Hb_002027_280 Hb_001488_270--Hb_002027_280 Hb_000544_060 Hb_000544_060 Hb_000574_510--Hb_000544_060 Hb_000574_510--Hb_003604_040 Hb_000574_510--Hb_000661_200 Hb_011671_230 Hb_011671_230 Hb_000574_510--Hb_011671_230 Hb_000191_130 Hb_000191_130 Hb_000062_470--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000062_470--Hb_000917_160 Hb_010417_060 Hb_010417_060 Hb_000062_470--Hb_010417_060 Hb_000062_470--Hb_000661_200 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_000949_010 Hb_000949_010 Hb_003604_040--Hb_000949_010 Hb_003604_030 Hb_003604_030 Hb_003604_040--Hb_003604_030 Hb_000117_070 Hb_000117_070 Hb_003604_040--Hb_000117_070 Hb_003604_040--Hb_011671_230 Hb_000046_180 Hb_000046_180 Hb_003604_040--Hb_000046_180 Hb_014720_020 Hb_014720_020 Hb_003120_070--Hb_014720_020 Hb_002005_120 Hb_002005_120 Hb_003120_070--Hb_002005_120 Hb_000751_140 Hb_000751_140 Hb_003120_070--Hb_000751_140 Hb_000526_060 Hb_000526_060 Hb_003120_070--Hb_000526_060 Hb_003120_070--Hb_000117_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4712 33.6946 9.78193 14.3874 25.3094 21.1025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.61186 3.78703 3.75429 11.8828 17.9075

CAGE analysis