Hb_003604_030

Information

Type -
Description -
Location Contig3604: 47402-52169
Sequence    

Annotation

kegg
ID eus:EUTSA_v100199261m
description hypothetical protein
nr
ID EYU23257.1
description hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
swissprot
ID Q8T2I8
description Serine/threonine-protein kinase sepA OS=Dictyostelium discoideum GN=sepA PE=2 SV=1
trembl
ID A0A022Q3K9
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025764mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase sepa-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37117: 46640-96499
cDNA
(Sanger)
(ID:Location)		 011_F03.ab1: 46640-46853

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003604_030 0.0 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
2 Hb_003604_040 0.0873418659 - - Serine/threonine-protein kinase sepA [Morus notabilis]
3 Hb_000162_020 0.1156523852 - - protein translocase, putative [Ricinus communis]
4 Hb_001401_060 0.1187029967 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
5 Hb_011947_050 0.1217169374 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
6 Hb_001117_160 0.1275308908 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
7 Hb_174865_020 0.1279101257 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
8 Hb_000176_130 0.1293115692 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
9 Hb_000949_010 0.1314355191 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
10 Hb_000046_180 0.1315472658 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
11 Hb_014497_020 0.1316721147 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
12 Hb_000086_690 0.1340319707 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
13 Hb_003211_040 0.1341977293 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
14 Hb_000836_020 0.1370672351 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
15 Hb_118840_030 0.1373208941 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
16 Hb_001488_270 0.1379652822 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_001989_050 0.1392703774 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
18 Hb_001235_230 0.1400425298 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
19 Hb_000105_030 0.1418984287 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
20 Hb_011671_230 0.1426622732 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003604_030 Hb_003604_030 Hb_003604_040 Hb_003604_040 Hb_003604_030--Hb_003604_040 Hb_000162_020 Hb_000162_020 Hb_003604_030--Hb_000162_020 Hb_001401_060 Hb_001401_060 Hb_003604_030--Hb_001401_060 Hb_011947_050 Hb_011947_050 Hb_003604_030--Hb_011947_050 Hb_001117_160 Hb_001117_160 Hb_003604_030--Hb_001117_160 Hb_174865_020 Hb_174865_020 Hb_003604_030--Hb_174865_020 Hb_000574_510 Hb_000574_510 Hb_003604_040--Hb_000574_510 Hb_000949_010 Hb_000949_010 Hb_003604_040--Hb_000949_010 Hb_000117_070 Hb_000117_070 Hb_003604_040--Hb_000117_070 Hb_011671_230 Hb_011671_230 Hb_003604_040--Hb_011671_230 Hb_000046_180 Hb_000046_180 Hb_003604_040--Hb_000046_180 Hb_002762_130 Hb_002762_130 Hb_000162_020--Hb_002762_130 Hb_003106_030 Hb_003106_030 Hb_000162_020--Hb_003106_030 Hb_003994_100 Hb_003994_100 Hb_000162_020--Hb_003994_100 Hb_000061_510 Hb_000061_510 Hb_000162_020--Hb_000061_510 Hb_000406_020 Hb_000406_020 Hb_000162_020--Hb_000406_020 Hb_005214_150 Hb_005214_150 Hb_000162_020--Hb_005214_150 Hb_000176_130 Hb_000176_130 Hb_001401_060--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001235_230 Hb_001235_230 Hb_001401_060--Hb_001235_230 Hb_002044_170 Hb_002044_170 Hb_001401_060--Hb_002044_170 Hb_001440_040 Hb_001440_040 Hb_001401_060--Hb_001440_040 Hb_001401_060--Hb_000406_020 Hb_011947_050--Hb_174865_020 Hb_011947_050--Hb_000949_010 Hb_003284_030 Hb_003284_030 Hb_011947_050--Hb_003284_030 Hb_003211_040 Hb_003211_040 Hb_011947_050--Hb_003211_040 Hb_007576_210 Hb_007576_210 Hb_011947_050--Hb_007576_210 Hb_002333_050 Hb_002333_050 Hb_011947_050--Hb_002333_050 Hb_000069_320 Hb_000069_320 Hb_001117_160--Hb_000069_320 Hb_002097_050 Hb_002097_050 Hb_001117_160--Hb_002097_050 Hb_001431_120 Hb_001431_120 Hb_001117_160--Hb_001431_120 Hb_001117_160--Hb_001401_060 Hb_001117_160--Hb_001440_040 Hb_174865_020--Hb_000949_010 Hb_174865_020--Hb_003284_030 Hb_174865_020--Hb_003211_040 Hb_000174_290 Hb_000174_290 Hb_174865_020--Hb_000174_290 Hb_018133_050 Hb_018133_050 Hb_174865_020--Hb_018133_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.37631 14.947 3.39655 6.95364 10.137 14.4544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32074 0.908477 4.97066 7.95225 10.7612

CAGE analysis