Hb_000069_320

Information

Type -
Description -
Location Contig69: 335600-341375
Sequence    

Annotation

kegg
ID rcu:RCOM_0718350
description hypothetical protein
nr
ID XP_012083206.1
description PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14255 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54212: 336558-336947 , PASA_asmbl_54214: 337917-338366 , PASA_asmbl_54216: 338836-341498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_320 0.0 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
2 Hb_005488_150 0.0771849514 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000041_090 0.0887211951 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
4 Hb_148909_030 0.0908038302 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
5 Hb_000406_020 0.0935597808 - - -
6 Hb_006295_020 0.0945974631 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
7 Hb_001440_040 0.0953804553 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
8 Hb_003119_080 0.1044506312 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
9 Hb_002233_100 0.1058140708 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
10 Hb_064903_010 0.1075421239 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
11 Hb_001235_230 0.1078569164 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_001401_060 0.1081266641 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
13 Hb_004108_100 0.1088666471 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
14 Hb_002636_110 0.1090830275 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
15 Hb_011344_020 0.1099132656 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
16 Hb_000011_210 0.112413252 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
17 Hb_004453_110 0.1128502626 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
18 Hb_000714_040 0.1129660826 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
19 Hb_000446_120 0.1134912049 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
20 Hb_188126_010 0.113538846 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_320 Hb_000069_320 Hb_005488_150 Hb_005488_150 Hb_000069_320--Hb_005488_150 Hb_000041_090 Hb_000041_090 Hb_000069_320--Hb_000041_090 Hb_148909_030 Hb_148909_030 Hb_000069_320--Hb_148909_030 Hb_000406_020 Hb_000406_020 Hb_000069_320--Hb_000406_020 Hb_006295_020 Hb_006295_020 Hb_000069_320--Hb_006295_020 Hb_001440_040 Hb_001440_040 Hb_000069_320--Hb_001440_040 Hb_005488_150--Hb_148909_030 Hb_000183_020 Hb_000183_020 Hb_005488_150--Hb_000183_020 Hb_004453_110 Hb_004453_110 Hb_005488_150--Hb_004453_110 Hb_009503_030 Hb_009503_030 Hb_005488_150--Hb_009503_030 Hb_000429_220 Hb_000429_220 Hb_005488_150--Hb_000429_220 Hb_000041_090--Hb_006295_020 Hb_002233_100 Hb_002233_100 Hb_000041_090--Hb_002233_100 Hb_006816_430 Hb_006816_430 Hb_000041_090--Hb_006816_430 Hb_000300_120 Hb_000300_120 Hb_000041_090--Hb_000300_120 Hb_003203_030 Hb_003203_030 Hb_000041_090--Hb_003203_030 Hb_003440_050 Hb_003440_050 Hb_000041_090--Hb_003440_050 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_001235_230 Hb_001235_230 Hb_000406_020--Hb_001235_230 Hb_003119_080 Hb_003119_080 Hb_000406_020--Hb_003119_080 Hb_000086_690 Hb_000086_690 Hb_000406_020--Hb_000086_690 Hb_000960_100 Hb_000960_100 Hb_000406_020--Hb_000960_100 Hb_002784_110 Hb_002784_110 Hb_000406_020--Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_000406_020--Hb_000446_120 Hb_005348_010 Hb_005348_010 Hb_006295_020--Hb_005348_010 Hb_000083_070 Hb_000083_070 Hb_006295_020--Hb_000083_070 Hb_000329_750 Hb_000329_750 Hb_006295_020--Hb_000329_750 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_006295_020--Hb_003203_030 Hb_001440_040--Hb_001235_230 Hb_001401_060 Hb_001401_060 Hb_001440_040--Hb_001401_060 Hb_032920_130 Hb_032920_130 Hb_001440_040--Hb_032920_130 Hb_001440_040--Hb_005488_150 Hb_002044_170 Hb_002044_170 Hb_001440_040--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40708 5.03742 2.5081 1.85907 7.34669 5.83818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37225 1.86388 2.55223 3.87078 6.53649

CAGE analysis