Hb_011671_230

Information

Type -
Description -
Location Contig11671: 194078-213513
Sequence    

Annotation

kegg
ID rcu:RCOM_1501550
description hypothetical protein
nr
ID XP_002511006.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C8Z4
description Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=1 SV=3
trembl
ID B9R9Y1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1501550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05152: 194135-196393 , PASA_asmbl_05153: 196572-201851 , PASA_asmbl_05154: 196891-197812 , PASA_asmbl_05155: 202201-203260 , PASA_asmbl_05156: 204781-207246 , PASA_asmbl_05157: 209947-210472 , PASA_asmbl_05158: 210482-213262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005214_150 0.0696938944 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
3 Hb_000949_010 0.0808960839 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_000768_180 0.0846731839 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
5 Hb_000176_130 0.0868493836 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
6 Hb_002784_010 0.0882439164 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
7 Hb_000574_510 0.0895993316 - - protein kinase, putative [Ricinus communis]
8 Hb_002762_130 0.0912646462 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
9 Hb_012184_060 0.0918566691 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
10 Hb_028487_010 0.0919097304 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
11 Hb_000327_080 0.0923817521 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
12 Hb_003604_040 0.0924169142 - - Serine/threonine-protein kinase sepA [Morus notabilis]
13 Hb_000062_470 0.092495144 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
14 Hb_000010_360 0.0934960459 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_005260_040 0.0941091882 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
16 Hb_005104_010 0.0952141102 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
17 Hb_003284_030 0.0956328501 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
18 Hb_000046_180 0.0964270512 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
19 Hb_000917_160 0.0973791251 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
20 Hb_010417_060 0.0975417708 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_011671_230 Hb_011671_230 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_002784_010 Hb_002784_010 Hb_011671_230--Hb_002784_010 Hb_000574_510 Hb_000574_510 Hb_011671_230--Hb_000574_510 Hb_005214_150--Hb_002784_010 Hb_001959_270 Hb_001959_270 Hb_005214_150--Hb_001959_270 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_003284_030 Hb_003284_030 Hb_000949_010--Hb_003284_030 Hb_011947_050 Hb_011947_050 Hb_000949_010--Hb_011947_050 Hb_000176_100 Hb_000176_100 Hb_000949_010--Hb_000176_100 Hb_003581_170 Hb_003581_170 Hb_000949_010--Hb_003581_170 Hb_001959_020 Hb_001959_020 Hb_000949_010--Hb_001959_020 Hb_174865_020 Hb_174865_020 Hb_000949_010--Hb_174865_020 Hb_005260_010 Hb_005260_010 Hb_000768_180--Hb_005260_010 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000236_220 Hb_000236_220 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_001235_230 Hb_001235_230 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_000176_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_002784_010--Hb_000261_030 Hb_000544_060 Hb_000544_060 Hb_000574_510--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000574_510--Hb_007813_030 Hb_003604_040 Hb_003604_040 Hb_000574_510--Hb_003604_040 Hb_000661_200 Hb_000661_200 Hb_000574_510--Hb_000661_200 Hb_000197_290 Hb_000197_290 Hb_000574_510--Hb_000197_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63155 14.7992 5.54241 5.35984 11.1595 11.9296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58625 2.52947 2.75585 9.66923 6.61044

CAGE analysis