Hb_000574_510

Information

Type -
Description -
Location Contig574: 440819-449162
Sequence    

Annotation

kegg
ID rcu:RCOM_0900830
description protein kinase, putative
nr
ID XP_002517656.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q9FY48
description E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2
trembl
ID B9RV87
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0900830 PE=4 SV=1
Gene Ontology
ID GO:0004672
description e3 ubiquitin-protein ligase keg-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49601: 440792-443717 , PASA_asmbl_49602: 444153-449189 , PASA_asmbl_49603: 444147-448582
cDNA
(Sanger)
(ID:Location)		 028_B09.ab1: 447347-449189

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_510 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_000544_060 0.0790504889 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
3 Hb_007813_030 0.0797653505 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
4 Hb_003604_040 0.084892427 - - Serine/threonine-protein kinase sepA [Morus notabilis]
5 Hb_000661_200 0.0873464048 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
6 Hb_000197_290 0.0887753403 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
7 Hb_011671_230 0.0895993316 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006663_040 0.0899155966 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
9 Hb_013749_020 0.0905421033 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
10 Hb_000949_010 0.0912838202 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
11 Hb_005104_010 0.0916749261 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
12 Hb_157966_010 0.091837293 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
13 Hb_002073_280 0.092558539 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
14 Hb_001221_160 0.0946524179 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
15 Hb_052764_060 0.0960384673 - - XPA-binding protein, putative [Ricinus communis]
16 Hb_000422_110 0.0972839405 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
17 Hb_000896_060 0.0994652639 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_001141_370 0.0995163034 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
19 Hb_018133_050 0.1004595617 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
20 Hb_000062_470 0.1008083622 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_510 Hb_000574_510 Hb_000544_060 Hb_000544_060 Hb_000574_510--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000574_510--Hb_007813_030 Hb_003604_040 Hb_003604_040 Hb_000574_510--Hb_003604_040 Hb_000661_200 Hb_000661_200 Hb_000574_510--Hb_000661_200 Hb_000197_290 Hb_000197_290 Hb_000574_510--Hb_000197_290 Hb_011671_230 Hb_011671_230 Hb_000574_510--Hb_011671_230 Hb_001141_370 Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000832_320 Hb_000832_320 Hb_000544_060--Hb_000832_320 Hb_007813_030--Hb_000661_200 Hb_000062_470 Hb_000062_470 Hb_007813_030--Hb_000062_470 Hb_007813_030--Hb_000197_290 Hb_007813_030--Hb_052764_060 Hb_005104_010 Hb_005104_010 Hb_007813_030--Hb_005104_010 Hb_000949_010 Hb_000949_010 Hb_003604_040--Hb_000949_010 Hb_003604_030 Hb_003604_030 Hb_003604_040--Hb_003604_030 Hb_000117_070 Hb_000117_070 Hb_003604_040--Hb_000117_070 Hb_003604_040--Hb_011671_230 Hb_000046_180 Hb_000046_180 Hb_003604_040--Hb_000046_180 Hb_000661_200--Hb_052764_060 Hb_000661_200--Hb_000062_470 Hb_001959_020 Hb_001959_020 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_001488_270 Hb_001488_270 Hb_000197_290--Hb_001488_270 Hb_000197_290--Hb_000062_470 Hb_000197_290--Hb_003604_040 Hb_003120_070 Hb_003120_070 Hb_000197_290--Hb_003120_070 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_002784_010 Hb_002784_010 Hb_011671_230--Hb_002784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6332 61.9514 16.5112 19.4932 39.7886 36.6523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9033 5.45888 12.8131 21.4915 19.8737

CAGE analysis