Hb_001431_120

Information

Type -
Description -
Location Contig1431: 124271-130795
Sequence    

Annotation

kegg
ID rcu:RCOM_0510040
description 116 kD U5 small nuclear ribonucleoprotein component, putative
nr
ID XP_012081110.1
description PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
swissprot
ID Q15029
description 116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1
trembl
ID A0A067KEB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16966 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 116 kda u5 small nuclear ribonucleoprotein component-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11383: 124587-130750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001431_120 0.0 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
2 Hb_012146_050 0.077167517 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
3 Hb_001341_180 0.0788135339 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
4 Hb_005402_040 0.0799921435 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
5 Hb_003645_060 0.0861232671 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
6 Hb_004064_050 0.0874436339 - - Structural maintenance of chromosome, putative [Ricinus communis]
7 Hb_001381_050 0.0877242363 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_000284_120 0.0898798954 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
9 Hb_008114_050 0.0935052746 - - hypothetical protein POPTR_0006s02430g [Populus trichocarpa]
10 Hb_003060_060 0.0946917741 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
11 Hb_001062_010 0.0947777866 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
12 Hb_011202_020 0.095253701 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
13 Hb_000395_070 0.0957634771 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
14 Hb_002641_130 0.0966202715 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
15 Hb_002631_140 0.097020714 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
16 Hb_000740_100 0.0971706858 - - calpain, putative [Ricinus communis]
17 Hb_041327_010 0.0978353943 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
18 Hb_027472_220 0.0991170693 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
19 Hb_007994_010 0.0995416237 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
20 Hb_188126_010 0.1002643846 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001431_120 Hb_001431_120 Hb_012146_050 Hb_012146_050 Hb_001431_120--Hb_012146_050 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_005402_040 Hb_005402_040 Hb_001431_120--Hb_005402_040 Hb_003645_060 Hb_003645_060 Hb_001431_120--Hb_003645_060 Hb_004064_050 Hb_004064_050 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_008114_050 Hb_008114_050 Hb_012146_050--Hb_008114_050 Hb_012146_050--Hb_005402_040 Hb_143489_010 Hb_143489_010 Hb_012146_050--Hb_143489_010 Hb_143489_020 Hb_143489_020 Hb_012146_050--Hb_143489_020 Hb_000788_070 Hb_000788_070 Hb_012146_050--Hb_000788_070 Hb_004048_120 Hb_004048_120 Hb_001341_180--Hb_004048_120 Hb_027472_220 Hb_027472_220 Hb_001341_180--Hb_027472_220 Hb_003280_020 Hb_003280_020 Hb_001341_180--Hb_003280_020 Hb_001341_180--Hb_005402_040 Hb_002639_080 Hb_002639_080 Hb_001341_180--Hb_002639_080 Hb_000261_480 Hb_000261_480 Hb_001341_180--Hb_000261_480 Hb_005402_040--Hb_027472_220 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_000563_130 Hb_000563_130 Hb_003645_060--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_003645_060--Hb_004267_040 Hb_001655_030 Hb_001655_030 Hb_003645_060--Hb_001655_030 Hb_000603_030 Hb_000603_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_000035_170 Hb_000035_170 Hb_003645_060--Hb_000035_170 Hb_002475_040 Hb_002475_040 Hb_004064_050--Hb_002475_040 Hb_158092_080 Hb_158092_080 Hb_004064_050--Hb_158092_080 Hb_000243_130 Hb_000243_130 Hb_004064_050--Hb_000243_130 Hb_004064_050--Hb_005402_040 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_007994_010 Hb_007994_010 Hb_001381_050--Hb_007994_010 Hb_001085_290 Hb_001085_290 Hb_001381_050--Hb_001085_290 Hb_001381_050--Hb_005402_040 Hb_000066_150 Hb_000066_150 Hb_001381_050--Hb_000066_150 Hb_000088_050 Hb_000088_050 Hb_001381_050--Hb_000088_050 Hb_001381_050--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02542 12.662 11.4892 8.73803 16.0551 16.8404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80738 4.9858 9.03302 21.4432 17.2049

CAGE analysis