Hb_000243_130

Information

Type -
Description -
Location Contig243: 92742-102556
Sequence    

Annotation

kegg
ID cic:CICLE_v10025040mg
description hypothetical protein
nr
ID EPS63979.1
description hypothetical protein M569_10795, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID S8CAN9
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10795 PE=4 SV=1
Gene Ontology
ID GO:0005774
description fg-gap repeat-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25362: 92769-102489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_130 0.0 - - hypothetical protein M569_10795, partial [Genlisea aurea]
2 Hb_044486_040 0.0636483752 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
3 Hb_007894_160 0.0724425772 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
4 Hb_004064_050 0.07295725 - - Structural maintenance of chromosome, putative [Ricinus communis]
5 Hb_033554_020 0.0832481311 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
6 Hb_002475_040 0.084921991 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
7 Hb_009486_080 0.0856189017 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
8 Hb_000086_150 0.085809262 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
9 Hb_002374_210 0.0862082902 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
10 Hb_002641_130 0.0876099748 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
11 Hb_178968_050 0.0877242916 - - PREDICTED: probable serine incorporator [Jatropha curcas]
12 Hb_158092_080 0.0899727084 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
13 Hb_003124_160 0.0900413149 - - dynamin, putative [Ricinus communis]
14 Hb_006618_090 0.0904060917 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
15 Hb_000608_230 0.0904205644 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
16 Hb_001221_090 0.0916885964 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
17 Hb_001454_170 0.0918543393 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
18 Hb_007123_050 0.0919575534 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
19 Hb_000365_030 0.0921396358 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
20 Hb_001673_050 0.0938137034 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_130 Hb_000243_130 Hb_044486_040 Hb_044486_040 Hb_000243_130--Hb_044486_040 Hb_007894_160 Hb_007894_160 Hb_000243_130--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_000243_130--Hb_004064_050 Hb_033554_020 Hb_033554_020 Hb_000243_130--Hb_033554_020 Hb_002475_040 Hb_002475_040 Hb_000243_130--Hb_002475_040 Hb_009486_080 Hb_009486_080 Hb_000243_130--Hb_009486_080 Hb_001646_010 Hb_001646_010 Hb_044486_040--Hb_001646_010 Hb_001221_090 Hb_001221_090 Hb_044486_040--Hb_001221_090 Hb_001904_030 Hb_001904_030 Hb_044486_040--Hb_001904_030 Hb_011202_030 Hb_011202_030 Hb_044486_040--Hb_011202_030 Hb_001341_160 Hb_001341_160 Hb_044486_040--Hb_001341_160 Hb_000610_040 Hb_000610_040 Hb_007894_160--Hb_000610_040 Hb_008397_010 Hb_008397_010 Hb_007894_160--Hb_008397_010 Hb_002686_040 Hb_002686_040 Hb_007894_160--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_007894_160--Hb_103747_020 Hb_007894_160--Hb_002475_040 Hb_004064_050--Hb_002475_040 Hb_158092_080 Hb_158092_080 Hb_004064_050--Hb_158092_080 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_001373_160 Hb_001373_160 Hb_033554_020--Hb_001373_160 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_006501_010 Hb_006501_010 Hb_033554_020--Hb_006501_010 Hb_000284_230 Hb_000284_230 Hb_002475_040--Hb_000284_230 Hb_002475_040--Hb_158092_080 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_001935_160 Hb_001935_160 Hb_002475_040--Hb_001935_160 Hb_000086_150 Hb_000086_150 Hb_009486_080--Hb_000086_150 Hb_002641_130 Hb_002641_130 Hb_009486_080--Hb_002641_130 Hb_000573_060 Hb_000573_060 Hb_009486_080--Hb_000573_060 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_000260_560 Hb_000260_560 Hb_009486_080--Hb_000260_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.439 30.1451 23.8862 19.8986 31.4169 18.1458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.78338 5.95129 9.09861 28.9901 23.09

CAGE analysis