Hb_000086_150

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig86: 105641-110700
Sequence    

Annotation

kegg
ID rcu:RCOM_0500140
description transcription factor, putative
nr
ID XP_012085298.1
description PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
swissprot
ID C0SUT9
description Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1
trembl
ID B9T1C1
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0500140 PE=4 SV=1
Gene Ontology
ID GO:0006464
description lysine-specific demethylase jmj16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60705: 105240-110580 , PASA_asmbl_60706: 107035-107229 , PASA_asmbl_60707: 107868-109478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_150 0.0 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
2 Hb_007305_020 0.0492965998 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
3 Hb_009486_080 0.0516076972 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
4 Hb_000573_060 0.0702733869 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
5 Hb_003124_160 0.0723192056 - - dynamin, putative [Ricinus communis]
6 Hb_000260_560 0.0744908758 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
7 Hb_002641_130 0.0764572554 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
8 Hb_001244_150 0.0804599256 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
9 Hb_004064_050 0.0805402346 - - Structural maintenance of chromosome, putative [Ricinus communis]
10 Hb_005181_040 0.0817327135 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
11 Hb_002631_140 0.0818331735 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
12 Hb_002027_280 0.0820907232 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
13 Hb_089140_050 0.0851263382 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
14 Hb_000243_130 0.085809262 - - hypothetical protein M569_10795, partial [Genlisea aurea]
15 Hb_000376_060 0.0859610462 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
16 Hb_006618_090 0.0862958261 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
17 Hb_010417_060 0.0869961398 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
18 Hb_004324_330 0.0880432303 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
19 Hb_002014_040 0.0884585665 - - site-1 protease, putative [Ricinus communis]
20 Hb_000082_070 0.08934233 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_150 Hb_000086_150 Hb_007305_020 Hb_007305_020 Hb_000086_150--Hb_007305_020 Hb_009486_080 Hb_009486_080 Hb_000086_150--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_000086_150--Hb_000573_060 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000260_560 Hb_000260_560 Hb_000086_150--Hb_000260_560 Hb_002641_130 Hb_002641_130 Hb_000086_150--Hb_002641_130 Hb_000205_260 Hb_000205_260 Hb_007305_020--Hb_000205_260 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_009486_080--Hb_002641_130 Hb_009486_080--Hb_000573_060 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_009486_080--Hb_000260_560 Hb_000573_060--Hb_002641_130 Hb_001244_150 Hb_001244_150 Hb_000573_060--Hb_001244_150 Hb_000573_060--Hb_000260_560 Hb_001001_150 Hb_001001_150 Hb_000573_060--Hb_001001_150 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_000958_070 Hb_000958_070 Hb_000260_560--Hb_000958_070 Hb_002233_130 Hb_002233_130 Hb_000260_560--Hb_002233_130 Hb_000260_560--Hb_001244_150 Hb_002641_130--Hb_001244_150 Hb_000563_130 Hb_000563_130 Hb_002641_130--Hb_000563_130 Hb_002641_130--Hb_001001_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0027 5.90974 4.72313 3.47023 6.2502 4.36138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82361 1.31387 1.67301 3.76132 5.8132

CAGE analysis