Hb_000958_070

Information

Type -
Description -
Location Contig958: 38657-42044
Sequence    

Annotation

kegg
ID pmum:103330632
description peptidyl-prolyl cis-trans isomerase FKBP42
nr
ID XP_007220404.1
description hypothetical protein PRUPE_ppa007681mg [Prunus persica]
swissprot
ID Q9LDC0
description Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1
trembl
ID K4AYD7
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g087470.2 PE=4 SV=1
Gene Ontology
ID GO:0005622
description peptidyl-prolyl cis-trans isomerase fkbp42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63582: 40811-43273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_070 0.0 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
2 Hb_000260_560 0.0623711759 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
3 Hb_011344_020 0.0786881126 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
4 Hb_004631_150 0.0809031579 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
5 Hb_002233_130 0.0899866258 - - transporter, putative [Ricinus communis]
6 Hb_162275_040 0.0937582546 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006355_020 0.0939200425 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_001244_150 0.0947274953 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
9 Hb_000082_070 0.0972189749 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
10 Hb_000086_150 0.0987289091 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
11 Hb_022250_100 0.0991003443 - - calnexin, putative [Ricinus communis]
12 Hb_004306_030 0.1001375791 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
13 Hb_000086_440 0.1022554081 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
14 Hb_000376_060 0.1027318567 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
15 Hb_000331_560 0.1030748473 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
16 Hb_011931_060 0.1033289283 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
17 Hb_000215_220 0.1039297598 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
18 Hb_009486_080 0.1039335573 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
19 Hb_000608_300 0.1039917436 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
20 Hb_089140_050 0.1044780297 - - hypothetical protein JCGZ_07485 [Jatropha curcas]

Gene co-expression network

sample Hb_000958_070 Hb_000958_070 Hb_000260_560 Hb_000260_560 Hb_000958_070--Hb_000260_560 Hb_011344_020 Hb_011344_020 Hb_000958_070--Hb_011344_020 Hb_004631_150 Hb_004631_150 Hb_000958_070--Hb_004631_150 Hb_002233_130 Hb_002233_130 Hb_000958_070--Hb_002233_130 Hb_162275_040 Hb_162275_040 Hb_000958_070--Hb_162275_040 Hb_006355_020 Hb_006355_020 Hb_000958_070--Hb_006355_020 Hb_000260_560--Hb_002233_130 Hb_000573_060 Hb_000573_060 Hb_000260_560--Hb_000573_060 Hb_000086_150 Hb_000086_150 Hb_000260_560--Hb_000086_150 Hb_001244_150 Hb_001244_150 Hb_000260_560--Hb_001244_150 Hb_009486_080 Hb_009486_080 Hb_000260_560--Hb_009486_080 Hb_089140_050 Hb_089140_050 Hb_011344_020--Hb_089140_050 Hb_000343_110 Hb_000343_110 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000376_060 Hb_000376_060 Hb_011344_020--Hb_000376_060 Hb_000429_220 Hb_000429_220 Hb_011344_020--Hb_000429_220 Hb_003747_120 Hb_003747_120 Hb_004631_150--Hb_003747_120 Hb_000836_290 Hb_000836_290 Hb_004631_150--Hb_000836_290 Hb_002014_040 Hb_002014_040 Hb_004631_150--Hb_002014_040 Hb_000362_170 Hb_000362_170 Hb_004631_150--Hb_000362_170 Hb_004631_150--Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_002539_110 Hb_002539_110 Hb_162275_040--Hb_002539_110 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_162275_040--Hb_006355_020 Hb_000284_230 Hb_000284_230 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3402 32.6651 29.8924 30.5462 53.1321 34.006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9162 11.5819 17.1425 19.9299 61.1664

CAGE analysis