Hb_001059_130

Information

Type -
Description -
Location Contig1059: 125866-131829
Sequence    

Annotation

kegg
ID rcu:RCOM_1095990
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012091485.1
description PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LPW7
description Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1
trembl
ID A0A067JMY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21350 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein transport inhibitor response 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01946: 127304-128452 , PASA_asmbl_01947: 125765-131924 , PASA_asmbl_01948: 130495-130737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_130 0.0 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
2 Hb_000284_230 0.0750036956 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
3 Hb_000588_080 0.0770391597 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
4 Hb_001194_020 0.0776469104 - - microtubule associated protein xmap215, putative [Ricinus communis]
5 Hb_000358_100 0.0780321329 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
6 Hb_000020_160 0.0800209121 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
7 Hb_006355_020 0.083746722 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_002475_040 0.0938201916 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
9 Hb_010315_020 0.0966636968 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
10 Hb_001935_160 0.0966978073 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
11 Hb_000261_100 0.0968922973 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
12 Hb_000066_150 0.0971349795 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_000562_050 0.0974352563 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
14 Hb_073973_150 0.0985891075 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
15 Hb_000684_350 0.0996328161 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
16 Hb_012055_110 0.1004906642 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
17 Hb_001226_110 0.1012546337 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
18 Hb_133702_020 0.1012980407 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000230_130 0.1024580828 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
20 Hb_000820_150 0.1048913657 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]

Gene co-expression network

sample Hb_001059_130 Hb_001059_130 Hb_000284_230 Hb_000284_230 Hb_001059_130--Hb_000284_230 Hb_000588_080 Hb_000588_080 Hb_001059_130--Hb_000588_080 Hb_001194_020 Hb_001194_020 Hb_001059_130--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_001059_130--Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_001059_130--Hb_000020_160 Hb_006355_020 Hb_006355_020 Hb_001059_130--Hb_006355_020 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_000284_230--Hb_001194_020 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_000284_230--Hb_006355_020 Hb_010315_020 Hb_010315_020 Hb_000588_080--Hb_010315_020 Hb_000588_080--Hb_000020_160 Hb_000069_480 Hb_000069_480 Hb_000588_080--Hb_000069_480 Hb_000588_080--Hb_001194_020 Hb_044486_020 Hb_044486_020 Hb_000588_080--Hb_044486_020 Hb_001194_020--Hb_008397_010 Hb_000640_070 Hb_000640_070 Hb_001194_020--Hb_000640_070 Hb_001194_020--Hb_073973_150 Hb_001194_020--Hb_006355_020 Hb_000358_100--Hb_000020_160 Hb_000359_190 Hb_000359_190 Hb_000358_100--Hb_000359_190 Hb_000066_150 Hb_000066_150 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000172_340 Hb_000172_340 Hb_000358_100--Hb_000172_340 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_000020_160--Hb_044486_020 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.40197 13.5362 9.15556 15.9283 9.77389 9.0147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71924 2.25779 2.88949 10.1977 16.3639

CAGE analysis