Hb_002233_130

Information

Type -
Description -
Location Contig2233: 101877-109076
Sequence    

Annotation

kegg
ID rcu:RCOM_0522080
description transporter, putative
nr
ID XP_002522753.1
description transporter, putative [Ricinus communis]
swissprot
ID P35659
description Protein DEK OS=Homo sapiens GN=DEK PE=1 SV=1
trembl
ID B9S9T4
description Transporter, putative OS=Ricinus communis GN=RCOM_0522080 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna ligase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23159: 101906-108990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_130 0.0 - - transporter, putative [Ricinus communis]
2 Hb_001244_150 0.0711161375 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
3 Hb_000260_560 0.0738080074 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
4 Hb_004324_330 0.0743045751 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
5 Hb_007305_020 0.077962797 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
6 Hb_007035_040 0.0797985618 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
7 Hb_002328_040 0.081917604 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
8 Hb_026053_040 0.0826659615 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005211_020 0.086344189 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
10 Hb_002600_060 0.0871031575 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
11 Hb_000205_260 0.0883785579 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
12 Hb_001662_140 0.0896234594 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
13 Hb_000958_070 0.0899866258 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
14 Hb_000086_150 0.0902879064 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
15 Hb_003900_030 0.0907729127 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
16 Hb_000033_110 0.0924260897 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
17 Hb_000563_420 0.0932138948 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
18 Hb_000331_560 0.093666297 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
19 Hb_000320_470 0.0952822816 - - calcium-dependent protein kinase [Hevea brasiliensis]
20 Hb_000331_130 0.0960598647 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002233_130 Hb_002233_130 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_000573_060 Hb_000573_060 Hb_001244_150--Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_001244_150--Hb_004324_330 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300 Hb_000958_070 Hb_000958_070 Hb_000260_560--Hb_000958_070 Hb_000260_560--Hb_000573_060 Hb_000086_150 Hb_000086_150 Hb_000260_560--Hb_000086_150 Hb_000260_560--Hb_001244_150 Hb_009486_080 Hb_009486_080 Hb_000260_560--Hb_009486_080 Hb_007283_010 Hb_007283_010 Hb_004324_330--Hb_007283_010 Hb_000175_410 Hb_000175_410 Hb_004324_330--Hb_000175_410 Hb_004324_330--Hb_007305_020 Hb_000205_260 Hb_000205_260 Hb_004324_330--Hb_000205_260 Hb_007305_020--Hb_000086_150 Hb_007305_020--Hb_000205_260 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_000331_130 Hb_000331_130 Hb_007035_040--Hb_000331_130 Hb_004884_180 Hb_004884_180 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_012053_090 Hb_012053_090 Hb_002328_040--Hb_012053_090 Hb_002600_060 Hb_002600_060 Hb_002328_040--Hb_002600_060 Hb_026053_040 Hb_026053_040 Hb_002328_040--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_002328_040--Hb_000033_110 Hb_000331_560 Hb_000331_560 Hb_002328_040--Hb_000331_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.363 27.3179 29.8534 15.1531 32.1496 23.339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1224 10.615 10.4545 18.9249 48.894

CAGE analysis