Hb_000245_150

Information

Type -
Description -
Location Contig245: 131447-138902
Sequence    

Annotation

kegg
ID rcu:RCOM_1491270
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_012069110.1
description PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
swissprot
ID P72991
description ATP-dependent zinc metalloprotease FtsH 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ftsH3 PE=1 SV=1
trembl
ID A0A067KXF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24880 PE=4 SV=1
Gene Ontology
ID GO:0009941
description atp-dependent zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25544: 132053-138709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_150 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
2 Hb_007035_040 0.075475015 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
3 Hb_000205_260 0.0762292704 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
4 Hb_005523_020 0.0815129424 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
5 Hb_007283_010 0.0823058821 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
6 Hb_000457_230 0.0832879163 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000878_160 0.0862392131 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
8 Hb_007044_110 0.0905044692 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000224_150 0.0920737146 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
10 Hb_004324_330 0.0933006406 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
11 Hb_089246_010 0.0947447082 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
12 Hb_000500_300 0.0951831088 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
13 Hb_098209_010 0.096304361 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
14 Hb_000331_130 0.0969540781 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
15 Hb_005288_070 0.0974831401 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_000115_280 0.0981349765 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_011972_020 0.0986396434 - - protein binding protein, putative [Ricinus communis]
18 Hb_007283_030 0.0991087321 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
19 Hb_002233_130 0.0996212918 - - transporter, putative [Ricinus communis]
20 Hb_000771_170 0.0997100335 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000245_150 Hb_000245_150 Hb_007035_040 Hb_007035_040 Hb_000245_150--Hb_007035_040 Hb_000205_260 Hb_000205_260 Hb_000245_150--Hb_000205_260 Hb_005523_020 Hb_005523_020 Hb_000245_150--Hb_005523_020 Hb_007283_010 Hb_007283_010 Hb_000245_150--Hb_007283_010 Hb_000457_230 Hb_000457_230 Hb_000245_150--Hb_000457_230 Hb_000878_160 Hb_000878_160 Hb_000245_150--Hb_000878_160 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_002233_130 Hb_002233_130 Hb_007035_040--Hb_002233_130 Hb_000331_130 Hb_000331_130 Hb_007035_040--Hb_000331_130 Hb_004884_180 Hb_004884_180 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_000205_260--Hb_005523_020 Hb_007044_110 Hb_007044_110 Hb_000205_260--Hb_007044_110 Hb_000205_260--Hb_000457_230 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_005523_020--Hb_007044_110 Hb_005523_020--Hb_000457_230 Hb_001636_050 Hb_001636_050 Hb_005523_020--Hb_001636_050 Hb_001231_090 Hb_001231_090 Hb_005523_020--Hb_001231_090 Hb_005523_020--Hb_007305_020 Hb_007283_010--Hb_005288_070 Hb_007283_010--Hb_000457_230 Hb_030414_040 Hb_030414_040 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_007283_010--Hb_000205_260 Hb_000457_230--Hb_007044_110 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_002461_020 Hb_002461_020 Hb_000878_160--Hb_002461_020 Hb_002600_070 Hb_002600_070 Hb_000878_160--Hb_002600_070 Hb_009178_010 Hb_009178_010 Hb_000878_160--Hb_009178_010 Hb_000878_160--Hb_007283_010 Hb_000878_160--Hb_004324_330 Hb_005333_140 Hb_005333_140 Hb_000878_160--Hb_005333_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2469 17.5987 25.7376 8.35176 13.0357 11.8159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88793 5.05754 6.61947 11.4971 22.3328

CAGE analysis