Hb_002942_110

Information

Type transcription factor
Description TF Family: ARF
Location Contig2942: 120164-125679
Sequence    

Annotation

kegg
ID rcu:RCOM_1503930
description Auxin response factor, putative
nr
ID XP_012090599.1
description PREDICTED: auxin response factor 2-like [Jatropha curcas]
swissprot
ID Q94JM3
description Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2
trembl
ID A0A067JF52
description Auxin response factor OS=Jatropha curcas GN=JCGZ_26377 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30794: 120228-125586 , PASA_asmbl_30795: 120988-125586
cDNA
(Sanger)
(ID:Location)		 001_K08.ab1: 120228-121631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_110 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
2 Hb_004195_120 0.0694627421 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
3 Hb_020178_050 0.0925110159 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
4 Hb_128695_030 0.094605394 - - heat shock protein, putative [Ricinus communis]
5 Hb_001369_770 0.0953222944 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
6 Hb_004324_060 0.0986943618 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_003895_020 0.1017554256 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
8 Hb_012038_010 0.1023323276 - - phospholipid-transporting atpase, putative [Ricinus communis]
9 Hb_000056_300 0.1043873908 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
10 Hb_000599_130 0.1056591501 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
11 Hb_000123_350 0.10892223 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
12 Hb_000117_070 0.1103275087 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
13 Hb_001231_080 0.1108352675 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
14 Hb_000227_310 0.1126484531 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
15 Hb_011791_020 0.1126890444 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
16 Hb_005649_090 0.1131538177 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
17 Hb_004800_240 0.1158706184 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
18 Hb_002073_280 0.1168378561 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
19 Hb_000526_060 0.1168769091 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
20 Hb_004310_040 0.117264055 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002942_110 Hb_002942_110 Hb_004195_120 Hb_004195_120 Hb_002942_110--Hb_004195_120 Hb_020178_050 Hb_020178_050 Hb_002942_110--Hb_020178_050 Hb_128695_030 Hb_128695_030 Hb_002942_110--Hb_128695_030 Hb_001369_770 Hb_001369_770 Hb_002942_110--Hb_001369_770 Hb_004324_060 Hb_004324_060 Hb_002942_110--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_002942_110--Hb_003895_020 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_020178_050--Hb_001369_770 Hb_000448_060 Hb_000448_060 Hb_020178_050--Hb_000448_060 Hb_020178_050--Hb_004324_060 Hb_020178_050--Hb_004195_120 Hb_000538_190 Hb_000538_190 Hb_020178_050--Hb_000538_190 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_178127_010 Hb_178127_010 Hb_128695_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_128695_030--Hb_001565_020 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020 Hb_004324_060--Hb_003895_020 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_172421_010 Hb_172421_010 Hb_004324_060--Hb_172421_010 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_012038_010 Hb_012038_010 Hb_004324_060--Hb_012038_010 Hb_003895_020--Hb_000866_080 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.3583 170.601 69.2954 42.7573 56.665 44.85
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1976 8.02373 20.1327 57.6644 32.5388

CAGE analysis