Hb_172421_010

Information

Type -
Description -
Location Contig172421: 32683-35929
Sequence    

Annotation

kegg
ID rcu:RCOM_1589470
description cysteine protease, putative (EC:1.3.1.74)
nr
ID ABG33750.1
description cysteine protease [Hevea brasiliensis]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID Q155L4
description Cysteine protease OS=Hevea brasiliensis GN=CP1 PE=2 SV=1
Gene Ontology
ID GO:0008234
description low-temperature-induced cysteine proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16280: 32723-35836
cDNA
(Sanger)
(ID:Location)		 001_L09.ab1: 34203-35834 , 008_M04.ab1: 34384-35834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172421_010 0.0 - - cysteine protease [Hevea brasiliensis]
2 Hb_004324_060 0.091694258 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_002248_120 0.0921944665 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_001951_240 0.0931064616 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
5 Hb_004994_300 0.0974384526 - - synaptotagmin, putative [Ricinus communis]
6 Hb_007313_070 0.1078041942 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
7 Hb_013405_180 0.1086405651 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
8 Hb_002918_320 0.1105587346 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
9 Hb_001911_010 0.1114490855 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
10 Hb_007031_040 0.1127968616 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
11 Hb_019863_060 0.1137856864 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
12 Hb_001561_010 0.1167927238 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
13 Hb_003605_220 0.1179938392 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
14 Hb_005885_030 0.1205399649 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_000270_230 0.1211871884 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
16 Hb_000613_220 0.1216437798 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
17 Hb_002774_150 0.1216656871 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
18 Hb_005496_160 0.122055806 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
19 Hb_006794_020 0.1230752027 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
20 Hb_001662_170 0.1237591171 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]

Gene co-expression network

sample Hb_172421_010 Hb_172421_010 Hb_004324_060 Hb_004324_060 Hb_172421_010--Hb_004324_060 Hb_002248_120 Hb_002248_120 Hb_172421_010--Hb_002248_120 Hb_001951_240 Hb_001951_240 Hb_172421_010--Hb_001951_240 Hb_004994_300 Hb_004994_300 Hb_172421_010--Hb_004994_300 Hb_007313_070 Hb_007313_070 Hb_172421_010--Hb_007313_070 Hb_013405_180 Hb_013405_180 Hb_172421_010--Hb_013405_180 Hb_003895_020 Hb_003895_020 Hb_004324_060--Hb_003895_020 Hb_002774_150 Hb_002774_150 Hb_004324_060--Hb_002774_150 Hb_000866_080 Hb_000866_080 Hb_004324_060--Hb_000866_080 Hb_002942_110 Hb_002942_110 Hb_004324_060--Hb_002942_110 Hb_012038_010 Hb_012038_010 Hb_004324_060--Hb_012038_010 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_001053_200 Hb_001053_200 Hb_001951_240--Hb_001053_200 Hb_000649_300 Hb_000649_300 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120 Hb_048755_020 Hb_048755_020 Hb_007313_070--Hb_048755_020 Hb_007313_070--Hb_003605_220 Hb_001437_010 Hb_001437_010 Hb_007313_070--Hb_001437_010 Hb_007313_070--Hb_002248_120 Hb_000008_280 Hb_000008_280 Hb_013405_180--Hb_000008_280 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.561 821.983 347.127 369.338 139.51 152.249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.7831 37.2052 66.3597 201.008 376.964

CAGE analysis