Hb_002073_020

Information

Type -
Description -
Location Contig2073: 10082-18016
Sequence    

Annotation

kegg
ID rcu:RCOM_0731430
description hypothetical protein
nr
ID XP_012068573.1
description PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S389
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21369: 12469-20086 , PASA_asmbl_21370: 18056-18362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_020 0.0 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
2 Hb_005539_100 0.1075302412 - - nucleoside transporter, putative [Ricinus communis]
3 Hb_172676_010 0.1080290629 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
4 Hb_001951_240 0.1118731353 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
5 Hb_000649_300 0.1137419732 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
6 Hb_001053_200 0.1186183294 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
7 Hb_005496_160 0.1190198523 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
8 Hb_132840_020 0.1214661957 - - PREDICTED: protein LHY [Jatropha curcas]
9 Hb_187005_010 0.1236749656 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
10 Hb_002804_010 0.1244438324 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
11 Hb_002874_170 0.1264308003 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
12 Hb_149484_010 0.1287135212 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
13 Hb_001102_090 0.1321869908 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
14 Hb_008103_100 0.1332390124 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
15 Hb_005375_070 0.1338942349 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
16 Hb_005288_050 0.134987786 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
17 Hb_000366_050 0.1369887959 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
18 Hb_002910_010 0.1375084698 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
19 Hb_032202_050 0.1387914567 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
20 Hb_000753_140 0.1391702371 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]

Gene co-expression network

sample Hb_002073_020 Hb_002073_020 Hb_005539_100 Hb_005539_100 Hb_002073_020--Hb_005539_100 Hb_172676_010 Hb_172676_010 Hb_002073_020--Hb_172676_010 Hb_001951_240 Hb_001951_240 Hb_002073_020--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_002073_020--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002073_020--Hb_001053_200 Hb_005496_160 Hb_005496_160 Hb_002073_020--Hb_005496_160 Hb_005539_100--Hb_172676_010 Hb_011381_070 Hb_011381_070 Hb_005539_100--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005539_100--Hb_001158_120 Hb_000366_050 Hb_000366_050 Hb_005539_100--Hb_000366_050 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_172676_010--Hb_001951_240 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_001053_200 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_000649_300--Hb_005496_160 Hb_000649_300--Hb_002874_170 Hb_000649_300--Hb_001053_200 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_002154_020 Hb_002154_020 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_007007_080 Hb_007007_080 Hb_005496_160--Hb_007007_080 Hb_005496_160--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46055 26.7672 17.2663 11.1429 2.18997 2.46019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.348925 1.85871 0.728134 7.2393 9.67898

CAGE analysis