Hb_000369_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig369: 86339-91481
Sequence    

Annotation

kegg
ID rcu:RCOM_1298340
description Disease resistance protein RPS2, putative (EC:3.1.3.16)
nr
ID XP_012078838.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067KJJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13365 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37992: 90080-90377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000369_070 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_005539_100 0.1207065352 - - nucleoside transporter, putative [Ricinus communis]
3 Hb_000522_130 0.1209630315 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
4 Hb_001538_050 0.122814735 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
5 Hb_006483_090 0.1255119554 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
6 Hb_004605_020 0.1272313205 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
7 Hb_023386_050 0.1275759358 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001123_170 0.1286592213 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006052_060 0.1289045589 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_004306_140 0.131559061 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_172676_010 0.1335751172 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
12 Hb_061908_020 0.1373893271 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_033312_090 0.1396172128 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
14 Hb_006618_020 0.1428078752 - - Vacuolar-processing enzyme precursor [Ricinus communis]
15 Hb_002809_120 0.1434362896 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
16 Hb_012098_180 0.1453612679 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
17 Hb_002343_020 0.1456187141 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
18 Hb_000477_110 0.1463080306 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
19 Hb_003656_170 0.1469420336 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
20 Hb_002078_240 0.1471537812 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]

Gene co-expression network

sample Hb_000369_070 Hb_000369_070 Hb_005539_100 Hb_005539_100 Hb_000369_070--Hb_005539_100 Hb_000522_130 Hb_000522_130 Hb_000369_070--Hb_000522_130 Hb_001538_050 Hb_001538_050 Hb_000369_070--Hb_001538_050 Hb_006483_090 Hb_006483_090 Hb_000369_070--Hb_006483_090 Hb_004605_020 Hb_004605_020 Hb_000369_070--Hb_004605_020 Hb_023386_050 Hb_023386_050 Hb_000369_070--Hb_023386_050 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_011381_070 Hb_011381_070 Hb_005539_100--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005539_100--Hb_001158_120 Hb_000366_050 Hb_000366_050 Hb_005539_100--Hb_000366_050 Hb_002073_020 Hb_002073_020 Hb_005539_100--Hb_002073_020 Hb_033312_090 Hb_033312_090 Hb_000522_130--Hb_033312_090 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_000522_130--Hb_001538_050 Hb_003914_050 Hb_003914_050 Hb_000522_130--Hb_003914_050 Hb_008040_060 Hb_008040_060 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130 Hb_001538_050--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_001538_050--Hb_000237_070 Hb_001123_170 Hb_001123_170 Hb_001538_050--Hb_001123_170 Hb_001377_130 Hb_001377_130 Hb_001538_050--Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001538_050--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_006483_090--Hb_000477_110 Hb_002849_180 Hb_002849_180 Hb_006483_090--Hb_002849_180 Hb_006269_010 Hb_006269_010 Hb_006483_090--Hb_006269_010 Hb_001153_090 Hb_001153_090 Hb_006483_090--Hb_001153_090 Hb_000007_440 Hb_000007_440 Hb_006483_090--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_006483_090--Hb_007483_080 Hb_061908_020 Hb_061908_020 Hb_004605_020--Hb_061908_020 Hb_027337_030 Hb_027337_030 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_023386_050--Hb_001123_170 Hb_000100_210 Hb_000100_210 Hb_023386_050--Hb_000100_210 Hb_002375_060 Hb_002375_060 Hb_023386_050--Hb_002375_060 Hb_003656_170 Hb_003656_170 Hb_023386_050--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_023386_050--Hb_002324_050 Hb_005000_050 Hb_005000_050 Hb_023386_050--Hb_005000_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485336 0.988705 0.443221 0.400427 0.0303302 0.0230995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0302345 0.392327 0.455461

CAGE analysis