Hb_033312_090

Information

Type -
Description -
Location Contig33312: 91859-93897
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08590g
description POPTRDRAFT_817912; HMGI/Y family protein
nr
ID XP_012077820.1
description PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
swissprot
ID Q00423
description HMG-Y-related protein A OS=Glycine max PE=2 SV=1
trembl
ID A0A067KDV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1
Gene Ontology
ID GO:0000786
description hmg-y-related protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34966: 91845-93947 , PASA_asmbl_34967: 92184-93112
cDNA
(Sanger)
(ID:Location)		 032_K11.ab1: 91845-93520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_090 0.0 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
2 Hb_000522_130 0.0929385123 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
3 Hb_015882_020 0.1015911268 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_005569_030 0.1079776267 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
5 Hb_000705_130 0.1157681544 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001538_050 0.1170452021 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
7 Hb_008040_060 0.1200517697 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
8 Hb_000313_100 0.121329936 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
9 Hb_002890_320 0.1218862874 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
10 Hb_006618_020 0.1236476481 - - Vacuolar-processing enzyme precursor [Ricinus communis]
11 Hb_175670_010 0.1240639341 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_002375_080 0.1261239308 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007007_090 0.126861264 - - phospholipase d beta, putative [Ricinus communis]
14 Hb_001515_030 0.1269269762 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_004837_110 0.132003464 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
16 Hb_007102_010 0.1322412647 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
17 Hb_001534_150 0.1344813176 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
18 Hb_002783_140 0.1362752201 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
19 Hb_004143_140 0.1369724427 - - glycosyltransferase, partial [Arabidopsis thaliana]
20 Hb_000347_380 0.1383349392 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_033312_090 Hb_033312_090 Hb_000522_130 Hb_000522_130 Hb_033312_090--Hb_000522_130 Hb_015882_020 Hb_015882_020 Hb_033312_090--Hb_015882_020 Hb_005569_030 Hb_005569_030 Hb_033312_090--Hb_005569_030 Hb_000705_130 Hb_000705_130 Hb_033312_090--Hb_000705_130 Hb_001538_050 Hb_001538_050 Hb_033312_090--Hb_001538_050 Hb_008040_060 Hb_008040_060 Hb_033312_090--Hb_008040_060 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_000522_130--Hb_001538_050 Hb_003914_050 Hb_003914_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060 Hb_000522_130--Hb_000705_130 Hb_015882_020--Hb_000705_130 Hb_015882_020--Hb_000522_130 Hb_000027_060 Hb_000027_060 Hb_015882_020--Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_015882_020--Hb_001534_150 Hb_004030_070 Hb_004030_070 Hb_015882_020--Hb_004030_070 Hb_000313_100 Hb_000313_100 Hb_005569_030--Hb_000313_100 Hb_033153_040 Hb_033153_040 Hb_005569_030--Hb_033153_040 Hb_175670_010 Hb_175670_010 Hb_005569_030--Hb_175670_010 Hb_002890_320 Hb_002890_320 Hb_005569_030--Hb_002890_320 Hb_001515_030 Hb_001515_030 Hb_005569_030--Hb_001515_030 Hb_167272_010 Hb_167272_010 Hb_005569_030--Hb_167272_010 Hb_000705_130--Hb_000027_060 Hb_000331_710 Hb_000331_710 Hb_000705_130--Hb_000331_710 Hb_000705_130--Hb_008040_060 Hb_000705_130--Hb_001534_150 Hb_001538_050--Hb_012098_180 Hb_000237_070 Hb_000237_070 Hb_001538_050--Hb_000237_070 Hb_001123_170 Hb_001123_170 Hb_001538_050--Hb_001123_170 Hb_001377_130 Hb_001377_130 Hb_001538_050--Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001538_050--Hb_000382_030 Hb_002529_080 Hb_002529_080 Hb_008040_060--Hb_002529_080 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_008040_060--Hb_003914_050 Hb_008040_060--Hb_000027_060 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32199 95.414 31.2573 28.0402 2.1698 1.38474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.491459 0.463848 0.0712618 21.0349 40.241

CAGE analysis