Hb_015882_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig15882: 27785-32943
Sequence    

Annotation

kegg
ID rcu:RCOM_1579060
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002513539.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9RIH0
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1579060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015882_020 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_000705_130 0.0894404367 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033312_090 0.1015911268 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
4 Hb_000522_130 0.1246567145 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
5 Hb_000027_060 0.1303305265 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
6 Hb_001534_150 0.1311859922 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
7 Hb_004030_070 0.1321954165 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_000333_120 0.1338815816 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
9 Hb_001345_030 0.1371384612 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
10 Hb_000819_010 0.1392915093 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
11 Hb_008040_060 0.1393630345 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
12 Hb_002739_070 0.1423079152 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
13 Hb_000347_380 0.1456626098 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_006052_040 0.1514691775 - - pyruvate decarboxylase [Hevea brasiliensis]
15 Hb_009247_030 0.1528256128 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_000397_090 0.154170609 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
17 Hb_000331_710 0.1562435611 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_107552_020 0.1568219466 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
19 Hb_010921_060 0.1580865234 - - ATP binding protein, putative [Ricinus communis]
20 Hb_077995_010 0.1607534639 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_015882_020 Hb_015882_020 Hb_000705_130 Hb_000705_130 Hb_015882_020--Hb_000705_130 Hb_033312_090 Hb_033312_090 Hb_015882_020--Hb_033312_090 Hb_000522_130 Hb_000522_130 Hb_015882_020--Hb_000522_130 Hb_000027_060 Hb_000027_060 Hb_015882_020--Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_015882_020--Hb_001534_150 Hb_004030_070 Hb_004030_070 Hb_015882_020--Hb_004030_070 Hb_000705_130--Hb_000027_060 Hb_000331_710 Hb_000331_710 Hb_000705_130--Hb_000331_710 Hb_008040_060 Hb_008040_060 Hb_000705_130--Hb_008040_060 Hb_000705_130--Hb_001534_150 Hb_000705_130--Hb_000522_130 Hb_033312_090--Hb_000522_130 Hb_005569_030 Hb_005569_030 Hb_033312_090--Hb_005569_030 Hb_033312_090--Hb_000705_130 Hb_001538_050 Hb_001538_050 Hb_033312_090--Hb_001538_050 Hb_033312_090--Hb_008040_060 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_000522_130--Hb_001538_050 Hb_003914_050 Hb_003914_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060 Hb_000027_060--Hb_001534_150 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000027_060--Hb_008040_060 Hb_000027_060--Hb_003914_050 Hb_030370_070 Hb_030370_070 Hb_001534_150--Hb_030370_070 Hb_107552_020 Hb_107552_020 Hb_001534_150--Hb_107552_020 Hb_001534_150--Hb_000331_710 Hb_008550_030 Hb_008550_030 Hb_001534_150--Hb_008550_030 Hb_008253_040 Hb_008253_040 Hb_004030_070--Hb_008253_040 Hb_000333_120 Hb_000333_120 Hb_004030_070--Hb_000333_120 Hb_001345_030 Hb_001345_030 Hb_004030_070--Hb_001345_030 Hb_004166_010 Hb_004166_010 Hb_004030_070--Hb_004166_010 Hb_001504_270 Hb_001504_270 Hb_004030_070--Hb_001504_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0100033 1.44932 0.339872 0.254357 0.0472158 0.0357947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.243172 0.444743

CAGE analysis