Hb_107552_020

Information

Type -
Description -
Location Contig107552: 12698-13357
Sequence    

Annotation

kegg
ID rcu:RCOM_0608740
description Ethylene-responsive transcription factor 1B, putative
nr
ID XP_002521963.1
description Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
swissprot
ID Q8LDC8
description Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2
trembl
ID B9S7J4
description Ethylene-responsive transcription factor 1B, putative OS=Ricinus communis GN=RCOM_0608740 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107552_020 0.0 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
2 Hb_000347_380 0.0985833391 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_001534_150 0.0996723252 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
4 Hb_019026_040 0.1057669882 - - S-locus lectin protein kinase family protein [Theobroma cacao]
5 Hb_003811_030 0.1128075405 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
6 Hb_030370_070 0.1213454737 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000027_060 0.1230387621 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
8 Hb_000331_710 0.1355761752 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_002871_170 0.1363644881 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
10 Hb_000705_130 0.1366728168 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000313_100 0.1388944225 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
12 Hb_004880_100 0.1451624935 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
13 Hb_000247_150 0.1462285393 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
14 Hb_000002_090 0.1466551441 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
15 Hb_039650_030 0.1490174766 - - hypothetical protein RCOM_2128750 [Ricinus communis]
16 Hb_004945_050 0.1497224987 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
17 Hb_006873_030 0.1505390755 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_002890_320 0.1541982651 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
19 Hb_175670_010 0.1549227526 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_015882_020 0.1568219466 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_107552_020 Hb_107552_020 Hb_000347_380 Hb_000347_380 Hb_107552_020--Hb_000347_380 Hb_001534_150 Hb_001534_150 Hb_107552_020--Hb_001534_150 Hb_019026_040 Hb_019026_040 Hb_107552_020--Hb_019026_040 Hb_003811_030 Hb_003811_030 Hb_107552_020--Hb_003811_030 Hb_030370_070 Hb_030370_070 Hb_107552_020--Hb_030370_070 Hb_000027_060 Hb_000027_060 Hb_107552_020--Hb_000027_060 Hb_000705_130 Hb_000705_130 Hb_000347_380--Hb_000705_130 Hb_000347_380--Hb_019026_040 Hb_000347_380--Hb_001534_150 Hb_033312_090 Hb_033312_090 Hb_000347_380--Hb_033312_090 Hb_004880_100 Hb_004880_100 Hb_000347_380--Hb_004880_100 Hb_001534_150--Hb_000027_060 Hb_001534_150--Hb_030370_070 Hb_001534_150--Hb_000705_130 Hb_000331_710 Hb_000331_710 Hb_001534_150--Hb_000331_710 Hb_008550_030 Hb_008550_030 Hb_001534_150--Hb_008550_030 Hb_019026_040--Hb_003811_030 Hb_010175_050 Hb_010175_050 Hb_019026_040--Hb_010175_050 Hb_036492_020 Hb_036492_020 Hb_019026_040--Hb_036492_020 Hb_004007_210 Hb_004007_210 Hb_019026_040--Hb_004007_210 Hb_006873_030 Hb_006873_030 Hb_003811_030--Hb_006873_030 Hb_003929_040 Hb_003929_040 Hb_003811_030--Hb_003929_040 Hb_003811_030--Hb_036492_020 Hb_003811_030--Hb_010175_050 Hb_000029_180 Hb_000029_180 Hb_030370_070--Hb_000029_180 Hb_000465_380 Hb_000465_380 Hb_030370_070--Hb_000465_380 Hb_030370_070--Hb_008550_030 Hb_001989_080 Hb_001989_080 Hb_030370_070--Hb_001989_080 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000027_060--Hb_000705_130 Hb_008040_060 Hb_008040_060 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.622153 0.16216 0.0813329 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0504839 0.220915

CAGE analysis