Hb_019026_040

Information

Type -
Description -
Location Contig19026: 19886-23735
Sequence    

Annotation

kegg
ID tcc:TCM_031233
description S-locus lectin protein kinase family protein
nr
ID XP_007021182.1
description S-locus lectin protein kinase family protein [Theobroma cacao]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID A0A061F7R1
description S-locus lectin protein kinase family protein OS=Theobroma cacao GN=TCM_031233 PE=4 SV=1
Gene Ontology
ID GO:0004674
description s-locus lectin protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18980: 20556-21045 , PASA_asmbl_18981: 23002-23460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019026_040 0.0 - - S-locus lectin protein kinase family protein [Theobroma cacao]
2 Hb_003811_030 0.1047137155 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
3 Hb_107552_020 0.1057669882 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
4 Hb_010175_050 0.1149681778 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
5 Hb_000347_380 0.1262108775 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_036492_020 0.1304709837 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
7 Hb_004007_210 0.1320599503 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
8 Hb_152414_010 0.135428286 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
9 Hb_005054_320 0.1396079981 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
10 Hb_000032_590 0.1421301003 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
11 Hb_000656_260 0.1452345126 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
12 Hb_004108_120 0.1479958286 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
13 Hb_006358_030 0.1484897417 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
14 Hb_002871_170 0.1488765229 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
15 Hb_004241_170 0.1508713478 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
16 Hb_008341_010 0.1509455529 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
17 Hb_005772_020 0.152863231 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_000112_040 0.157390666 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_001534_150 0.1575272486 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
20 Hb_000313_100 0.1576691548 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]

Gene co-expression network

sample Hb_019026_040 Hb_019026_040 Hb_003811_030 Hb_003811_030 Hb_019026_040--Hb_003811_030 Hb_107552_020 Hb_107552_020 Hb_019026_040--Hb_107552_020 Hb_010175_050 Hb_010175_050 Hb_019026_040--Hb_010175_050 Hb_000347_380 Hb_000347_380 Hb_019026_040--Hb_000347_380 Hb_036492_020 Hb_036492_020 Hb_019026_040--Hb_036492_020 Hb_004007_210 Hb_004007_210 Hb_019026_040--Hb_004007_210 Hb_006873_030 Hb_006873_030 Hb_003811_030--Hb_006873_030 Hb_003811_030--Hb_107552_020 Hb_003929_040 Hb_003929_040 Hb_003811_030--Hb_003929_040 Hb_003811_030--Hb_036492_020 Hb_003811_030--Hb_010175_050 Hb_107552_020--Hb_000347_380 Hb_001534_150 Hb_001534_150 Hb_107552_020--Hb_001534_150 Hb_030370_070 Hb_030370_070 Hb_107552_020--Hb_030370_070 Hb_000027_060 Hb_000027_060 Hb_107552_020--Hb_000027_060 Hb_008341_010 Hb_008341_010 Hb_010175_050--Hb_008341_010 Hb_005772_020 Hb_005772_020 Hb_010175_050--Hb_005772_020 Hb_004241_170 Hb_004241_170 Hb_010175_050--Hb_004241_170 Hb_000230_250 Hb_000230_250 Hb_010175_050--Hb_000230_250 Hb_000705_130 Hb_000705_130 Hb_000347_380--Hb_000705_130 Hb_000347_380--Hb_001534_150 Hb_033312_090 Hb_033312_090 Hb_000347_380--Hb_033312_090 Hb_004880_100 Hb_004880_100 Hb_000347_380--Hb_004880_100 Hb_006358_030 Hb_006358_030 Hb_036492_020--Hb_006358_030 Hb_000402_180 Hb_000402_180 Hb_036492_020--Hb_000402_180 Hb_000656_260 Hb_000656_260 Hb_036492_020--Hb_000656_260 Hb_134022_010 Hb_134022_010 Hb_036492_020--Hb_134022_010 Hb_036492_020--Hb_003929_040 Hb_152414_010 Hb_152414_010 Hb_036492_020--Hb_152414_010 Hb_004007_210--Hb_000230_250 Hb_005054_320 Hb_005054_320 Hb_004007_210--Hb_005054_320 Hb_004007_210--Hb_010175_050 Hb_004007_210--Hb_005772_020 Hb_004880_120 Hb_004880_120 Hb_004007_210--Hb_004880_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0293151 3.84464 1.51748 0.549395 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.035819 0 0 0.201484 1.85672

CAGE analysis