Hb_000347_380

Information

Type -
Description -
Location Contig347: 388355-390344
Sequence    

Annotation

kegg
ID rcu:RCOM_0651870
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002521318.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9CAH1
description Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1
trembl
ID B9S5P9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0651870 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase at1g72540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36232: 388405-388750 , PASA_asmbl_36233: 388828-388953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_380 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_107552_020 0.0985833391 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
3 Hb_000705_130 0.1250492266 - - conserved hypothetical protein [Ricinus communis]
4 Hb_019026_040 0.1262108775 - - S-locus lectin protein kinase family protein [Theobroma cacao]
5 Hb_001534_150 0.135706752 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
6 Hb_033312_090 0.1383349392 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
7 Hb_004880_100 0.1414679982 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
8 Hb_015882_020 0.1456626098 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
9 Hb_003811_030 0.1464554876 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
10 Hb_000412_090 0.1492613925 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002890_320 0.1497770261 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
12 Hb_000027_060 0.1506945285 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
13 Hb_000177_130 0.1525777064 - - wall-associated kinase, putative [Ricinus communis]
14 Hb_000313_100 0.154711955 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
15 Hb_000331_710 0.1583382696 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_005569_030 0.1642842042 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
17 Hb_003914_050 0.1687663879 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
18 Hb_002045_220 0.1703283311 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
19 Hb_004108_120 0.1706010312 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
20 Hb_000465_100 0.1710485006 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000347_380 Hb_000347_380 Hb_107552_020 Hb_107552_020 Hb_000347_380--Hb_107552_020 Hb_000705_130 Hb_000705_130 Hb_000347_380--Hb_000705_130 Hb_019026_040 Hb_019026_040 Hb_000347_380--Hb_019026_040 Hb_001534_150 Hb_001534_150 Hb_000347_380--Hb_001534_150 Hb_033312_090 Hb_033312_090 Hb_000347_380--Hb_033312_090 Hb_004880_100 Hb_004880_100 Hb_000347_380--Hb_004880_100 Hb_107552_020--Hb_001534_150 Hb_107552_020--Hb_019026_040 Hb_003811_030 Hb_003811_030 Hb_107552_020--Hb_003811_030 Hb_030370_070 Hb_030370_070 Hb_107552_020--Hb_030370_070 Hb_000027_060 Hb_000027_060 Hb_107552_020--Hb_000027_060 Hb_015882_020 Hb_015882_020 Hb_000705_130--Hb_015882_020 Hb_000705_130--Hb_000027_060 Hb_000331_710 Hb_000331_710 Hb_000705_130--Hb_000331_710 Hb_008040_060 Hb_008040_060 Hb_000705_130--Hb_008040_060 Hb_000705_130--Hb_001534_150 Hb_000522_130 Hb_000522_130 Hb_000705_130--Hb_000522_130 Hb_019026_040--Hb_003811_030 Hb_010175_050 Hb_010175_050 Hb_019026_040--Hb_010175_050 Hb_036492_020 Hb_036492_020 Hb_019026_040--Hb_036492_020 Hb_004007_210 Hb_004007_210 Hb_019026_040--Hb_004007_210 Hb_001534_150--Hb_000027_060 Hb_001534_150--Hb_030370_070 Hb_001534_150--Hb_000331_710 Hb_008550_030 Hb_008550_030 Hb_001534_150--Hb_008550_030 Hb_033312_090--Hb_000522_130 Hb_033312_090--Hb_015882_020 Hb_005569_030 Hb_005569_030 Hb_033312_090--Hb_005569_030 Hb_033312_090--Hb_000705_130 Hb_001538_050 Hb_001538_050 Hb_033312_090--Hb_001538_050 Hb_033312_090--Hb_008040_060 Hb_000177_130 Hb_000177_130 Hb_004880_100--Hb_000177_130 Hb_013720_010 Hb_013720_010 Hb_004880_100--Hb_013720_010 Hb_004880_100--Hb_000331_710 Hb_002010_020 Hb_002010_020 Hb_004880_100--Hb_002010_020 Hb_000002_100 Hb_000002_100 Hb_004880_100--Hb_000002_100 Hb_004880_100--Hb_000705_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.8346 4.25638 1.49152 0.123466 0.014068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0637797 0.15053 0 1.5526 4.77257

CAGE analysis