Hb_008550_030

Information

Type -
Description -
Location Contig8550: 45041-48936
Sequence    

Annotation

kegg
ID cit:102625014
description tonoplast dicarboxylate transporter-like
nr
ID XP_012078086.1
description PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
swissprot
ID Q8LG88
description Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2
trembl
ID A0A067K9K7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13697 PE=4 SV=1
Gene Ontology
ID GO:0005623
description tonoplast dicarboxylate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60533: 45081-48974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008550_030 0.0 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
2 Hb_002097_210 0.0881339165 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004945_050 0.0978083171 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
4 Hb_002267_030 0.1054084709 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
5 Hb_002341_040 0.1074849952 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
6 Hb_030370_070 0.1146887583 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000060_100 0.1176509089 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
8 Hb_004122_020 0.1202659943 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
9 Hb_001677_120 0.1207615731 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_001534_150 0.1224869851 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
11 Hb_006052_040 0.1251795413 - - pyruvate decarboxylase [Hevea brasiliensis]
12 Hb_000027_060 0.1304046941 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
13 Hb_005714_140 0.1314865733 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_000260_130 0.1317009083 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
15 Hb_002475_010 0.1341495293 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
16 Hb_001511_270 0.1344881466 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
17 Hb_003376_150 0.1351935115 - - PREDICTED: peroxidase 21 [Jatropha curcas]
18 Hb_027474_010 0.1352764406 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
19 Hb_000331_710 0.1353318322 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_000000_070 0.142209956 - - allene oxide synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_008550_030 Hb_008550_030 Hb_002097_210 Hb_002097_210 Hb_008550_030--Hb_002097_210 Hb_004945_050 Hb_004945_050 Hb_008550_030--Hb_004945_050 Hb_002267_030 Hb_002267_030 Hb_008550_030--Hb_002267_030 Hb_002341_040 Hb_002341_040 Hb_008550_030--Hb_002341_040 Hb_030370_070 Hb_030370_070 Hb_008550_030--Hb_030370_070 Hb_000060_100 Hb_000060_100 Hb_008550_030--Hb_000060_100 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_145139_010 Hb_145139_010 Hb_002097_210--Hb_145139_010 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002239_020 Hb_002239_020 Hb_002097_210--Hb_002239_020 Hb_002475_010 Hb_002475_010 Hb_002097_210--Hb_002475_010 Hb_004945_050--Hb_000060_100 Hb_004945_050--Hb_001677_120 Hb_004945_050--Hb_002341_040 Hb_000325_070 Hb_000325_070 Hb_004945_050--Hb_000325_070 Hb_000027_060 Hb_000027_060 Hb_004945_050--Hb_000027_060 Hb_005714_140 Hb_005714_140 Hb_002267_030--Hb_005714_140 Hb_000260_130 Hb_000260_130 Hb_002267_030--Hb_000260_130 Hb_123078_010 Hb_123078_010 Hb_002267_030--Hb_123078_010 Hb_105814_020 Hb_105814_020 Hb_002267_030--Hb_105814_020 Hb_002820_090 Hb_002820_090 Hb_002267_030--Hb_002820_090 Hb_002341_040--Hb_000060_100 Hb_002341_040--Hb_001677_120 Hb_001534_150 Hb_001534_150 Hb_002341_040--Hb_001534_150 Hb_002341_040--Hb_002097_210 Hb_000029_180 Hb_000029_180 Hb_030370_070--Hb_000029_180 Hb_030370_070--Hb_001534_150 Hb_000465_380 Hb_000465_380 Hb_030370_070--Hb_000465_380 Hb_001989_080 Hb_001989_080 Hb_030370_070--Hb_001989_080 Hb_107552_020 Hb_107552_020 Hb_030370_070--Hb_107552_020 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_002218_080 Hb_002218_080 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111958 153.852 19.6766 44.103 0.0517888 0.0762788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142942 0.0187448 0 10.647 30.9329

CAGE analysis