Hb_002341_040

Information

Type -
Description -
Location Contig2341: 82805-91609
Sequence    

Annotation

kegg
ID rcu:RCOM_0489350
description serine/threonine-protein kinase bri1, putative (EC:1.3.1.74)
nr
ID XP_002530496.1
description serine/threonine-protein kinase bri1, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9SWX7
description Serine/threonine-protein kinase bri1, putative OS=Ricinus communis GN=RCOM_0489350 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24572: 84429-84565 , PASA_asmbl_24574: 85353-85567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002341_040 0.0 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
2 Hb_004945_050 0.1007208716 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
3 Hb_008550_030 0.1074849952 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
4 Hb_000060_100 0.1286843216 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
5 Hb_001677_120 0.1322445484 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_001534_150 0.1351644061 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
7 Hb_002097_210 0.1379886964 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000027_060 0.1427728455 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
9 Hb_000325_070 0.1468181681 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_030370_070 0.1468674378 - - ATP binding protein, putative [Ricinus communis]
11 Hb_013691_060 0.1515234631 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
12 Hb_001511_270 0.1515366347 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
13 Hb_000247_150 0.1524778757 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
14 Hb_026415_010 0.1551807232 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
15 Hb_000567_110 0.1566235193 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
16 Hb_000331_710 0.1569093426 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_013720_010 0.1585160478 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
18 Hb_107552_020 0.1588641973 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
19 Hb_001821_050 0.1593471083 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
20 Hb_000359_080 0.1605742856 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002341_040 Hb_002341_040 Hb_004945_050 Hb_004945_050 Hb_002341_040--Hb_004945_050 Hb_008550_030 Hb_008550_030 Hb_002341_040--Hb_008550_030 Hb_000060_100 Hb_000060_100 Hb_002341_040--Hb_000060_100 Hb_001677_120 Hb_001677_120 Hb_002341_040--Hb_001677_120 Hb_001534_150 Hb_001534_150 Hb_002341_040--Hb_001534_150 Hb_002097_210 Hb_002097_210 Hb_002341_040--Hb_002097_210 Hb_004945_050--Hb_000060_100 Hb_004945_050--Hb_001677_120 Hb_004945_050--Hb_008550_030 Hb_000325_070 Hb_000325_070 Hb_004945_050--Hb_000325_070 Hb_000027_060 Hb_000027_060 Hb_004945_050--Hb_000027_060 Hb_008550_030--Hb_002097_210 Hb_002267_030 Hb_002267_030 Hb_008550_030--Hb_002267_030 Hb_030370_070 Hb_030370_070 Hb_008550_030--Hb_030370_070 Hb_008550_030--Hb_000060_100 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_002218_080 Hb_002218_080 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160 Hb_002375_080 Hb_002375_080 Hb_001677_120--Hb_002375_080 Hb_001821_050 Hb_001821_050 Hb_001677_120--Hb_001821_050 Hb_007007_090 Hb_007007_090 Hb_001677_120--Hb_007007_090 Hb_006573_280 Hb_006573_280 Hb_001677_120--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_001677_120--Hb_004724_300 Hb_001534_150--Hb_000027_060 Hb_001534_150--Hb_030370_070 Hb_107552_020 Hb_107552_020 Hb_001534_150--Hb_107552_020 Hb_000705_130 Hb_000705_130 Hb_001534_150--Hb_000705_130 Hb_000331_710 Hb_000331_710 Hb_001534_150--Hb_000331_710 Hb_001534_150--Hb_008550_030 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_145139_010 Hb_145139_010 Hb_002097_210--Hb_145139_010 Hb_002097_210--Hb_001677_120 Hb_002239_020 Hb_002239_020 Hb_002097_210--Hb_002239_020 Hb_002475_010 Hb_002475_010 Hb_002097_210--Hb_002475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00334914 2.72597 0.501358 0.752244 0 0.00876215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0119311 0.0574906 0.143953 0.718684

CAGE analysis