Hb_000060_100

Information

Type transcription factor
Description TF Family: OFP
Location Contig60: 132211-133530
Sequence    

Annotation

kegg
ID rcu:RCOM_1252020
description hypothetical protein
nr
ID XP_002522269.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VZN1
description Transcription repressor OFP5 OS=Arabidopsis thaliana GN=OFP5 PE=1 SV=1
trembl
ID B9S8F0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1252020 PE=4 SV=1
Gene Ontology
ID GO:0043232
description transcription repressor ofp5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_100 0.0 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
2 Hb_160576_010 0.0661239395 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_004945_050 0.0937226919 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
4 Hb_001104_270 0.1032112091 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
5 Hb_002218_080 0.1115282505 - - Ankyrin repeat family protein, putative [Theobroma cacao]
6 Hb_002110_050 0.1162130393 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001956_160 0.1165250194 - - hypothetical protein L484_009438 [Morus notabilis]
8 Hb_008550_030 0.1176509089 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
9 Hb_026415_010 0.1202619347 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
10 Hb_113396_010 0.1227976072 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001511_270 0.127665902 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
12 Hb_005714_140 0.128503089 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_002341_040 0.1286843216 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
14 Hb_000032_230 0.1301062102 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
15 Hb_000325_070 0.1311907026 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_035677_010 0.1328257766 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001677_120 0.1335444318 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_000024_020 0.1352306836 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
19 Hb_000247_150 0.1364776178 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
20 Hb_134022_010 0.1369207227 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000060_100 Hb_000060_100 Hb_160576_010 Hb_160576_010 Hb_000060_100--Hb_160576_010 Hb_004945_050 Hb_004945_050 Hb_000060_100--Hb_004945_050 Hb_001104_270 Hb_001104_270 Hb_000060_100--Hb_001104_270 Hb_002218_080 Hb_002218_080 Hb_000060_100--Hb_002218_080 Hb_002110_050 Hb_002110_050 Hb_000060_100--Hb_002110_050 Hb_001956_160 Hb_001956_160 Hb_000060_100--Hb_001956_160 Hb_160576_010--Hb_002110_050 Hb_000032_230 Hb_000032_230 Hb_160576_010--Hb_000032_230 Hb_160576_010--Hb_002218_080 Hb_160576_010--Hb_001956_160 Hb_002548_020 Hb_002548_020 Hb_160576_010--Hb_002548_020 Hb_001677_120 Hb_001677_120 Hb_004945_050--Hb_001677_120 Hb_008550_030 Hb_008550_030 Hb_004945_050--Hb_008550_030 Hb_002341_040 Hb_002341_040 Hb_004945_050--Hb_002341_040 Hb_000325_070 Hb_000325_070 Hb_004945_050--Hb_000325_070 Hb_000027_060 Hb_000027_060 Hb_004945_050--Hb_000027_060 Hb_013720_010 Hb_013720_010 Hb_001104_270--Hb_013720_010 Hb_004112_050 Hb_004112_050 Hb_001104_270--Hb_004112_050 Hb_001104_270--Hb_002218_080 Hb_004899_360 Hb_004899_360 Hb_001104_270--Hb_004899_360 Hb_035677_010 Hb_035677_010 Hb_001104_270--Hb_035677_010 Hb_002218_080--Hb_002110_050 Hb_001310_080 Hb_001310_080 Hb_002218_080--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_002218_080--Hb_113396_010 Hb_002218_080--Hb_002548_020 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_002218_080--Hb_004112_050 Hb_002110_050--Hb_002548_020 Hb_004241_100 Hb_004241_100 Hb_002110_050--Hb_004241_100 Hb_002110_050--Hb_000032_230 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_001956_160--Hb_000032_230 Hb_008948_110 Hb_008948_110 Hb_001956_160--Hb_008948_110 Hb_032260_100 Hb_032260_100 Hb_001956_160--Hb_032260_100 Hb_001956_160--Hb_002110_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.63797 0.145369 0.209044 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0113998 0.118576

CAGE analysis