Hb_032260_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig32260: 84090-85541
Sequence    

Annotation

kegg
ID rcu:RCOM_1691430
description hypothetical protein
nr
ID XP_012086748.1
description PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
swissprot
ID Q8H0Y8
description Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2
trembl
ID S5CKD4
description Uncharacterized protein OS=Jatropha curcas GN=WRKY54 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34201: 83920-84114
cDNA
(Sanger)
(ID:Location)		 050_G23r.ab1: 84838-87144

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032260_100 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
2 Hb_029622_080 0.0378836799 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
3 Hb_000656_350 0.0768776518 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
4 Hb_000529_050 0.0928253064 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
5 Hb_000808_090 0.0958104238 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
6 Hb_007441_150 0.0999043253 - - Ankyrin repeat family protein [Theobroma cacao]
7 Hb_000571_030 0.1030503965 - - ammonium transporter, putative [Ricinus communis]
8 Hb_009476_010 0.1030783107 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
9 Hb_001477_080 0.1030841885 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
10 Hb_000221_280 0.1049922052 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
11 Hb_004586_120 0.1062853812 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_011287_020 0.110163869 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001257_040 0.1105507319 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
14 Hb_000322_020 0.1133101096 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
15 Hb_000422_050 0.1142712338 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
16 Hb_000313_190 0.116387455 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
17 Hb_001894_060 0.1167244841 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
18 Hb_096930_010 0.1170483972 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
19 Hb_001956_160 0.1179675166 - - hypothetical protein L484_009438 [Morus notabilis]
20 Hb_000032_230 0.1219609546 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]

Gene co-expression network

sample Hb_032260_100 Hb_032260_100 Hb_029622_080 Hb_029622_080 Hb_032260_100--Hb_029622_080 Hb_000656_350 Hb_000656_350 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_000808_090 Hb_000808_090 Hb_032260_100--Hb_000808_090 Hb_007441_150 Hb_007441_150 Hb_032260_100--Hb_007441_150 Hb_000571_030 Hb_000571_030 Hb_032260_100--Hb_000571_030 Hb_029622_080--Hb_000808_090 Hb_029622_080--Hb_000656_350 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_029622_080--Hb_000571_030 Hb_001257_040 Hb_001257_040 Hb_029622_080--Hb_001257_040 Hb_000925_110 Hb_000925_110 Hb_000656_350--Hb_000925_110 Hb_000656_350--Hb_000571_030 Hb_000032_150 Hb_000032_150 Hb_000656_350--Hb_000032_150 Hb_000656_350--Hb_000808_090 Hb_000313_190 Hb_000313_190 Hb_000529_050--Hb_000313_190 Hb_001477_080 Hb_001477_080 Hb_000529_050--Hb_001477_080 Hb_000529_050--Hb_000221_280 Hb_004586_120 Hb_004586_120 Hb_000529_050--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_000529_050--Hb_000322_020 Hb_000665_090 Hb_000665_090 Hb_000808_090--Hb_000665_090 Hb_000627_130 Hb_000627_130 Hb_000808_090--Hb_000627_130 Hb_124953_010 Hb_124953_010 Hb_000808_090--Hb_124953_010 Hb_000024_020 Hb_000024_020 Hb_007441_150--Hb_000024_020 Hb_001894_060 Hb_001894_060 Hb_007441_150--Hb_001894_060 Hb_000988_020 Hb_000988_020 Hb_007441_150--Hb_000988_020 Hb_000805_150 Hb_000805_150 Hb_007441_150--Hb_000805_150 Hb_007441_150--Hb_029622_080 Hb_001619_140 Hb_001619_140 Hb_000571_030--Hb_001619_140 Hb_000571_030--Hb_000032_150 Hb_000571_030--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_000571_030--Hb_007858_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367117 80.4504 27.7234 24.5171 0.107159 0.484546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.258364 0.33871 0.31422 1.48036 5.03261

CAGE analysis