Hb_000032_150

Information

Type transcription factor
Description TF Family: WRKY
Location Contig32: 117933-119517
Sequence    

Annotation

kegg
ID rcu:RCOM_1691430
description hypothetical protein
nr
ID XP_002509941.1
description hypothetical protein RCOM_1691430 [Ricinus communis]
swissprot
ID Q8H0Y8
description Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2
trembl
ID B9RCQ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691430 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33699: 117826-119267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_150 0.0 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
2 Hb_047955_010 0.0493977426 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
3 Hb_124953_010 0.0596773993 - - hypothetical protein RCOM_1314600 [Ricinus communis]
4 Hb_001257_040 0.0690639767 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
5 Hb_003207_230 0.074413595 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
6 Hb_007858_020 0.0752209578 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
7 Hb_004032_220 0.081722556 - - Calmodulin, putative [Ricinus communis]
8 Hb_034642_010 0.0907743518 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
9 Hb_027506_060 0.0912536975 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_005054_330 0.094030454 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
11 Hb_004586_120 0.0945643354 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_000656_350 0.0960439635 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
13 Hb_000571_030 0.0984090931 - - ammonium transporter, putative [Ricinus communis]
14 Hb_000836_310 0.0989520737 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
15 Hb_000359_230 0.1027180307 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
16 Hb_167186_010 0.1035089303 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_002548_030 0.1037920133 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
18 Hb_157957_010 0.107247252 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
19 Hb_002252_030 0.107699678 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
20 Hb_110356_010 0.1092858116 - - hypothetical protein JCGZ_21614 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_150 Hb_000032_150 Hb_047955_010 Hb_047955_010 Hb_000032_150--Hb_047955_010 Hb_124953_010 Hb_124953_010 Hb_000032_150--Hb_124953_010 Hb_001257_040 Hb_001257_040 Hb_000032_150--Hb_001257_040 Hb_003207_230 Hb_003207_230 Hb_000032_150--Hb_003207_230 Hb_007858_020 Hb_007858_020 Hb_000032_150--Hb_007858_020 Hb_004032_220 Hb_004032_220 Hb_000032_150--Hb_004032_220 Hb_047955_010--Hb_003207_230 Hb_000359_230 Hb_000359_230 Hb_047955_010--Hb_000359_230 Hb_047955_010--Hb_124953_010 Hb_002252_030 Hb_002252_030 Hb_047955_010--Hb_002252_030 Hb_157957_010 Hb_157957_010 Hb_047955_010--Hb_157957_010 Hb_124953_010--Hb_003207_230 Hb_124953_010--Hb_007858_020 Hb_005054_330 Hb_005054_330 Hb_124953_010--Hb_005054_330 Hb_124953_010--Hb_004032_220 Hb_004586_120 Hb_004586_120 Hb_001257_040--Hb_004586_120 Hb_000422_050 Hb_000422_050 Hb_001257_040--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_001257_040--Hb_000322_020 Hb_001257_040--Hb_124953_010 Hb_001257_040--Hb_004032_220 Hb_099188_010 Hb_099188_010 Hb_003207_230--Hb_099188_010 Hb_003207_230--Hb_005054_330 Hb_003207_230--Hb_000359_230 Hb_007858_020--Hb_005054_330 Hb_007858_020--Hb_004032_220 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_000836_310 Hb_000836_310 Hb_004032_220--Hb_000836_310 Hb_004032_220--Hb_005054_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0381193 205.788 84.5062 38.8263 0 0.0538212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435679 0.445505 0.0635497 1.20946 3.81666

CAGE analysis