Hb_124953_010

Information

Type -
Description -
Location Contig124953: 2307-3458
Sequence    

Annotation

kegg
ID rcu:RCOM_1314600
description hypothetical protein
nr
ID XP_002518946.1
description hypothetical protein RCOM_1314600 [Ricinus communis]
swissprot
ID Q9SIH5
description Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At2g36090 PE=2 SV=1
trembl
ID B9RYX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1314600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07584: 2595-3084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124953_010 0.0 - - hypothetical protein RCOM_1314600 [Ricinus communis]
2 Hb_003207_230 0.0460248291 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
3 Hb_000032_150 0.0596773993 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
4 Hb_007858_020 0.0747641244 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
5 Hb_005054_330 0.0835526097 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
6 Hb_047955_010 0.0849083673 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
7 Hb_004032_220 0.0865768775 - - Calmodulin, putative [Ricinus communis]
8 Hb_000627_130 0.0870070161 - - Polcalcin Jun o, putative [Ricinus communis]
9 Hb_001257_040 0.0875401447 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
10 Hb_000359_230 0.0926852593 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
11 Hb_002548_030 0.0928644129 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
12 Hb_110356_010 0.0968765389 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
13 Hb_000808_090 0.0993865414 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
14 Hb_099188_010 0.0998453823 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000656_350 0.1007128233 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
16 Hb_002542_030 0.1031096037 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
17 Hb_034581_010 0.1041947875 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
18 Hb_000164_160 0.1128806966 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
19 Hb_002066_050 0.1142491679 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
20 Hb_167186_010 0.1166715033 - - cation-transporting atpase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_124953_010 Hb_124953_010 Hb_003207_230 Hb_003207_230 Hb_124953_010--Hb_003207_230 Hb_000032_150 Hb_000032_150 Hb_124953_010--Hb_000032_150 Hb_007858_020 Hb_007858_020 Hb_124953_010--Hb_007858_020 Hb_005054_330 Hb_005054_330 Hb_124953_010--Hb_005054_330 Hb_047955_010 Hb_047955_010 Hb_124953_010--Hb_047955_010 Hb_004032_220 Hb_004032_220 Hb_124953_010--Hb_004032_220 Hb_003207_230--Hb_000032_150 Hb_099188_010 Hb_099188_010 Hb_003207_230--Hb_099188_010 Hb_003207_230--Hb_005054_330 Hb_003207_230--Hb_047955_010 Hb_000359_230 Hb_000359_230 Hb_003207_230--Hb_000359_230 Hb_000032_150--Hb_047955_010 Hb_001257_040 Hb_001257_040 Hb_000032_150--Hb_001257_040 Hb_000032_150--Hb_007858_020 Hb_000032_150--Hb_004032_220 Hb_007858_020--Hb_005054_330 Hb_007858_020--Hb_004032_220 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_047955_010--Hb_000359_230 Hb_002252_030 Hb_002252_030 Hb_047955_010--Hb_002252_030 Hb_157957_010 Hb_157957_010 Hb_047955_010--Hb_157957_010 Hb_000836_310 Hb_000836_310 Hb_004032_220--Hb_000836_310 Hb_004032_220--Hb_001257_040 Hb_004032_220--Hb_005054_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116486 175.88 87.456 42.0305 0.123518 0.0395222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.170439 0.100549 0.124432 0.134368 4.2905

CAGE analysis