Hb_004032_220

Information

Type -
Description -
Location Contig4032: 221364-221921
Sequence    

Annotation

kegg
ID rcu:RCOM_1602570
description Calmodulin, putative
nr
ID XP_002510759.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q9SRE6
description Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1
trembl
ID B9R8W6
description Calmodulin, putative OS=Ricinus communis GN=RCOM_1602570 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein cml19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_220 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_007858_020 0.0666523828 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
3 Hb_000032_150 0.081722556 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
4 Hb_000836_310 0.0829460058 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
5 Hb_124953_010 0.0865768775 - - hypothetical protein RCOM_1314600 [Ricinus communis]
6 Hb_001257_040 0.0891304599 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
7 Hb_005054_330 0.0899975567 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
8 Hb_008725_220 0.0924238879 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
9 Hb_003207_230 0.0959963749 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
10 Hb_000340_060 0.0960833421 - - conserved hypothetical protein [Ricinus communis]
11 Hb_047955_010 0.102277239 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
12 Hb_000959_240 0.1034919923 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_167186_010 0.1073744939 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_000127_220 0.1124381705 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
15 Hb_000627_130 0.1225386695 - - Polcalcin Jun o, putative [Ricinus communis]
16 Hb_000571_030 0.1228040304 - - ammonium transporter, putative [Ricinus communis]
17 Hb_106810_010 0.123309201 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_034642_010 0.1238363899 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
19 Hb_010964_010 0.1247914408 - - -
20 Hb_027506_060 0.1253280007 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004032_220 Hb_004032_220 Hb_007858_020 Hb_007858_020 Hb_004032_220--Hb_007858_020 Hb_000032_150 Hb_000032_150 Hb_004032_220--Hb_000032_150 Hb_000836_310 Hb_000836_310 Hb_004032_220--Hb_000836_310 Hb_124953_010 Hb_124953_010 Hb_004032_220--Hb_124953_010 Hb_001257_040 Hb_001257_040 Hb_004032_220--Hb_001257_040 Hb_005054_330 Hb_005054_330 Hb_004032_220--Hb_005054_330 Hb_007858_020--Hb_005054_330 Hb_007858_020--Hb_124953_010 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_007858_020--Hb_000032_150 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_047955_010 Hb_047955_010 Hb_000032_150--Hb_047955_010 Hb_000032_150--Hb_124953_010 Hb_000032_150--Hb_001257_040 Hb_003207_230 Hb_003207_230 Hb_000032_150--Hb_003207_230 Hb_000127_220 Hb_000127_220 Hb_000836_310--Hb_000127_220 Hb_106810_010 Hb_106810_010 Hb_000836_310--Hb_106810_010 Hb_012496_010 Hb_012496_010 Hb_000836_310--Hb_012496_010 Hb_000340_060 Hb_000340_060 Hb_000836_310--Hb_000340_060 Hb_000836_310--Hb_000032_150 Hb_124953_010--Hb_003207_230 Hb_124953_010--Hb_005054_330 Hb_124953_010--Hb_047955_010 Hb_004586_120 Hb_004586_120 Hb_001257_040--Hb_004586_120 Hb_000422_050 Hb_000422_050 Hb_001257_040--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_001257_040--Hb_000322_020 Hb_001257_040--Hb_124953_010 Hb_005054_330--Hb_167186_010 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_005054_330--Hb_003207_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82154 2195.73 1022.37 290.595 16.1731 2.13586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.788965 3.71978 1.53137 2.15303 59.7561

CAGE analysis