Hb_000422_050

Information

Type -
Description -
Location Contig422: 53140-59142
Sequence    

Annotation

kegg
ID tcc:TCM_041300
description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
nr
ID XP_012084581.1
description PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
swissprot
ID Q9LXM2
description Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1
trembl
ID A0A067JTU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20215 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41722: 57244-59339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_050 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
2 Hb_000322_020 0.0680289809 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
3 Hb_001257_040 0.0754525694 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
4 Hb_004586_120 0.0816365165 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
5 Hb_002849_030 0.0896059523 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
6 Hb_000127_220 0.1034943068 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
7 Hb_012496_010 0.104257776 - - kinase, putative [Ricinus communis]
8 Hb_000571_030 0.1047030632 - - ammonium transporter, putative [Ricinus communis]
9 Hb_009476_010 0.1053236556 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
10 Hb_113396_020 0.1092346131 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
11 Hb_032260_100 0.1142712338 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
12 Hb_000340_060 0.1145296948 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029622_080 0.1184128655 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
14 Hb_011287_020 0.118895869 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001477_080 0.1194093254 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
16 Hb_000836_310 0.1195767858 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
17 Hb_005656_200 0.1196309573 - - Cation transport protein chaC, putative [Ricinus communis]
18 Hb_034642_010 0.1225062227 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
19 Hb_005618_020 0.1236129623 - - hypothetical protein RCOM_1342750 [Ricinus communis]
20 Hb_000347_360 0.1247342885 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000422_050 Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_002849_030 Hb_002849_030 Hb_000422_050--Hb_002849_030 Hb_000127_220 Hb_000127_220 Hb_000422_050--Hb_000127_220 Hb_012496_010 Hb_012496_010 Hb_000422_050--Hb_012496_010 Hb_000322_020--Hb_004586_120 Hb_000322_020--Hb_002849_030 Hb_000322_020--Hb_001257_040 Hb_000347_360 Hb_000347_360 Hb_000322_020--Hb_000347_360 Hb_000529_050 Hb_000529_050 Hb_000322_020--Hb_000529_050 Hb_001257_040--Hb_004586_120 Hb_000032_150 Hb_000032_150 Hb_001257_040--Hb_000032_150 Hb_124953_010 Hb_124953_010 Hb_001257_040--Hb_124953_010 Hb_004032_220 Hb_004032_220 Hb_001257_040--Hb_004032_220 Hb_125201_010 Hb_125201_010 Hb_004586_120--Hb_125201_010 Hb_005618_020 Hb_005618_020 Hb_004586_120--Hb_005618_020 Hb_001477_080 Hb_001477_080 Hb_004586_120--Hb_001477_080 Hb_002849_030--Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_002849_030--Hb_073870_020 Hb_009189_010 Hb_009189_010 Hb_002849_030--Hb_009189_010 Hb_048538_010 Hb_048538_010 Hb_002849_030--Hb_048538_010 Hb_000836_310 Hb_000836_310 Hb_000127_220--Hb_000836_310 Hb_000127_220--Hb_012496_010 Hb_000340_060 Hb_000340_060 Hb_000127_220--Hb_000340_060 Hb_000127_220--Hb_004032_220 Hb_000127_220--Hb_001257_040 Hb_035677_010 Hb_035677_010 Hb_012496_010--Hb_035677_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_012496_010--Hb_000836_310 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95706 885.154 238.954 137.959 1.10892 1.04562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47455 8.95968 3.57018 3.22185 55.2937

CAGE analysis