Hb_125201_010

Information

Type -
Description -
Location Contig125201: 648-1148
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03690g
description POPTRDRAFT_197204; hypothetical protein
nr
ID XP_002305669.2
description hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
swissprot
ID Q9M5P2
description Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1
trembl
ID B9H243
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03690g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07766: 604-1303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125201_010 0.0 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
2 Hb_009707_010 0.0620658569 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
3 Hb_004586_120 0.0783726517 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_000338_020 0.0809415175 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
5 Hb_005618_020 0.0820417289 - - hypothetical protein RCOM_1342750 [Ricinus communis]
6 Hb_157957_010 0.082569496 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
7 Hb_114932_010 0.0833081678 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000086_600 0.0849722489 - - -
9 Hb_027506_060 0.0850778812 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_006648_030 0.0859168304 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
11 Hb_064692_010 0.0916861944 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_041534_010 0.0965582807 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
13 Hb_002922_010 0.0967578519 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
14 Hb_005248_020 0.1017288678 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
15 Hb_000322_020 0.1064939151 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
16 Hb_001257_040 0.1072318807 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
17 Hb_003582_020 0.107360061 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
18 Hb_002252_030 0.1093677777 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
19 Hb_025477_020 0.1097077898 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
20 Hb_000904_090 0.1104927299 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_125201_010 Hb_125201_010 Hb_009707_010 Hb_009707_010 Hb_125201_010--Hb_009707_010 Hb_004586_120 Hb_004586_120 Hb_125201_010--Hb_004586_120 Hb_000338_020 Hb_000338_020 Hb_125201_010--Hb_000338_020 Hb_005618_020 Hb_005618_020 Hb_125201_010--Hb_005618_020 Hb_157957_010 Hb_157957_010 Hb_125201_010--Hb_157957_010 Hb_114932_010 Hb_114932_010 Hb_125201_010--Hb_114932_010 Hb_009707_010--Hb_114932_010 Hb_009707_010--Hb_000338_020 Hb_000086_600 Hb_000086_600 Hb_009707_010--Hb_000086_600 Hb_000904_090 Hb_000904_090 Hb_009707_010--Hb_000904_090 Hb_009683_060 Hb_009683_060 Hb_009707_010--Hb_009683_060 Hb_000322_020 Hb_000322_020 Hb_004586_120--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_004586_120--Hb_001257_040 Hb_000422_050 Hb_000422_050 Hb_004586_120--Hb_000422_050 Hb_004586_120--Hb_005618_020 Hb_001477_080 Hb_001477_080 Hb_004586_120--Hb_001477_080 Hb_000338_020--Hb_114932_010 Hb_064692_010 Hb_064692_010 Hb_000338_020--Hb_064692_010 Hb_000338_020--Hb_009683_060 Hb_167802_010 Hb_167802_010 Hb_000338_020--Hb_167802_010 Hb_005618_020--Hb_000086_600 Hb_106810_010 Hb_106810_010 Hb_005618_020--Hb_106810_010 Hb_117602_010 Hb_117602_010 Hb_005618_020--Hb_117602_010 Hb_000016_220 Hb_000016_220 Hb_005618_020--Hb_000016_220 Hb_034581_010 Hb_034581_010 Hb_157957_010--Hb_034581_010 Hb_036754_040 Hb_036754_040 Hb_157957_010--Hb_036754_040 Hb_110356_010 Hb_110356_010 Hb_157957_010--Hb_110356_010 Hb_000359_230 Hb_000359_230 Hb_157957_010--Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_157957_010--Hb_002548_030 Hb_157957_010--Hb_064692_010 Hb_114932_010--Hb_009683_060 Hb_114932_010--Hb_000904_090 Hb_114932_010--Hb_000086_600 Hb_114932_010--Hb_167802_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.40701 211.285 49.3107 45.6254 0.495405 0.153899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133774 0.315284 0.178115 0.6989 0.982791

CAGE analysis