Hb_034581_010

Information

Type -
Description -
Location Contig34581: 13367-14629
Sequence    

Annotation

kegg
ID rcu:RCOM_0701190
description chitinase, putative (EC:3.2.1.14)
nr
ID XP_012071625.1
description PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
swissprot
ID Q13231
description Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1
trembl
ID A0A067L2C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03993 PE=3 SV=1
Gene Ontology
ID GO:0004568
description acidic mammalian chitinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36081: 13374-14932
cDNA
(Sanger)
(ID:Location)		 016_P10.ab1: 13374-14099 , 027_C03.ab1: 13374-13988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034581_010 0.0 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
2 Hb_110356_010 0.0392830566 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
3 Hb_002548_030 0.0480196713 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
4 Hb_000359_230 0.0487005408 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
5 Hb_001677_140 0.0514002815 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
6 Hb_036754_040 0.0561983582 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_010136_020 0.0646915677 - - stress-induced receptor-like kinase [Medicago truncatula]
8 Hb_002006_110 0.0671887371 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
9 Hb_157957_010 0.0677784128 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
10 Hb_099188_010 0.0768932246 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_128851_020 0.0779363414 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_010477_020 0.0886726839 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
13 Hb_002252_030 0.0967961767 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
14 Hb_001511_200 0.0984679347 - - Embryonic abundant protein, putative [Ricinus communis]
15 Hb_184752_010 0.0986060144 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
16 Hb_019978_010 0.1035171934 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
17 Hb_124953_010 0.1041947875 - - hypothetical protein RCOM_1314600 [Ricinus communis]
18 Hb_047955_010 0.1049020311 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
19 Hb_003207_230 0.1100283082 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
20 Hb_000032_150 0.1130432865 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]

Gene co-expression network

sample Hb_034581_010 Hb_034581_010 Hb_110356_010 Hb_110356_010 Hb_034581_010--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_034581_010--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_034581_010--Hb_000359_230 Hb_001677_140 Hb_001677_140 Hb_034581_010--Hb_001677_140 Hb_036754_040 Hb_036754_040 Hb_034581_010--Hb_036754_040 Hb_010136_020 Hb_010136_020 Hb_034581_010--Hb_010136_020 Hb_110356_010--Hb_002548_030 Hb_110356_010--Hb_000359_230 Hb_110356_010--Hb_001677_140 Hb_099188_010 Hb_099188_010 Hb_110356_010--Hb_099188_010 Hb_128851_020 Hb_128851_020 Hb_110356_010--Hb_128851_020 Hb_002548_030--Hb_000359_230 Hb_002548_030--Hb_099188_010 Hb_002548_030--Hb_001677_140 Hb_002548_030--Hb_128851_020 Hb_000359_230--Hb_099188_010 Hb_000359_230--Hb_001677_140 Hb_000359_230--Hb_128851_020 Hb_001677_140--Hb_128851_020 Hb_001677_140--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001677_140--Hb_002006_110 Hb_001677_140--Hb_036754_040 Hb_036754_040--Hb_010136_020 Hb_036754_040--Hb_002006_110 Hb_019978_010 Hb_019978_010 Hb_036754_040--Hb_019978_010 Hb_036754_040--Hb_110356_010 Hb_010136_020--Hb_002006_110 Hb_010136_020--Hb_019978_010 Hb_184752_010 Hb_184752_010 Hb_010136_020--Hb_184752_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0407989 34.8759 14.4601 10.4635 0.0182043 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0652573 0 0 0

CAGE analysis