Hb_002006_110

Information

Type transcription factor
Description TF Family: LFY
Location Contig2006: 98143-100939
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11820g
description POPTRDRAFT_835248; LEAFY family protein
nr
ID AGF33325.1
description LEAFY-like protein [Pistacia chinensis]
swissprot
ID O04064
description Floricaula/leafy homolog OS=Populus trichocarpa GN=FL PE=2 SV=2
trembl
ID M1LEY1
description LEAFY-like protein OS=Pistacia chinensis GN=BLFYM1 PE=2 SV=1
Gene Ontology
ID GO:0003677
description leafy-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_110 0.0 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
2 Hb_010136_020 0.0031245068 - - stress-induced receptor-like kinase [Medicago truncatula]
3 Hb_036754_040 0.0228997589 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_001677_140 0.0445118615 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
5 Hb_019978_010 0.053799385 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
6 Hb_184752_010 0.0620086908 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
7 Hb_004724_290 0.0632782317 transcription factor TF Family: NAC -
8 Hb_034581_010 0.0671887371 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
9 Hb_110356_010 0.0764418847 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
10 Hb_001511_200 0.0793277776 - - Embryonic abundant protein, putative [Ricinus communis]
11 Hb_006916_220 0.0808028419 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
12 Hb_128851_020 0.0810556646 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_157957_010 0.0904347386 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
14 Hb_002548_030 0.0912883234 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
15 Hb_000359_230 0.0928415407 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
16 Hb_064692_010 0.103662715 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_004724_310 0.1062804678 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
18 Hb_099188_010 0.1082607905 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_013591_010 0.1086872992 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
20 Hb_000731_020 0.1111256575 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]

Gene co-expression network

sample Hb_002006_110 Hb_002006_110 Hb_010136_020 Hb_010136_020 Hb_002006_110--Hb_010136_020 Hb_036754_040 Hb_036754_040 Hb_002006_110--Hb_036754_040 Hb_001677_140 Hb_001677_140 Hb_002006_110--Hb_001677_140 Hb_019978_010 Hb_019978_010 Hb_002006_110--Hb_019978_010 Hb_184752_010 Hb_184752_010 Hb_002006_110--Hb_184752_010 Hb_004724_290 Hb_004724_290 Hb_002006_110--Hb_004724_290 Hb_010136_020--Hb_036754_040 Hb_010136_020--Hb_001677_140 Hb_010136_020--Hb_019978_010 Hb_010136_020--Hb_184752_010 Hb_034581_010 Hb_034581_010 Hb_010136_020--Hb_034581_010 Hb_036754_040--Hb_001677_140 Hb_036754_040--Hb_034581_010 Hb_036754_040--Hb_019978_010 Hb_110356_010 Hb_110356_010 Hb_036754_040--Hb_110356_010 Hb_128851_020 Hb_128851_020 Hb_001677_140--Hb_128851_020 Hb_001677_140--Hb_110356_010 Hb_001677_140--Hb_034581_010 Hb_019978_010--Hb_004724_290 Hb_019978_010--Hb_184752_010 Hb_006916_220 Hb_006916_220 Hb_019978_010--Hb_006916_220 Hb_184752_010--Hb_004724_290 Hb_184752_010--Hb_036754_040 Hb_184752_010--Hb_001677_140 Hb_011429_010 Hb_011429_010 Hb_004724_290--Hb_011429_010 Hb_004724_290--Hb_006916_220 Hb_004724_290--Hb_010136_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0375236 0.0148067 0.0156453 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis